[bug#28739] [PATCH 0/5] Update python{,2}-a*

[bug#28739] [PATCH 0/5] Update python{,2}-a*

[Cyril Roelandt]

Hello,

This patch series provides updates for the python{,2}-a* packages that could
"easily" be upgraded.

I rebuilt all the updated packages, and every package that depends on them, so
this should be pretty safe.

Cyril.
---
Cyril Roelandt (5):
  gnu: python-apispec: Update to 0.25.3.
  gnu: python-arrow: Update to 0.10.0.
  gnu: python-alembic: Update to 0.9.5.
  gnu: python-aniso8601: Update to 1.3.0.
  gnu: Add python2-aniso8601.

 gnu/packages/python.scm | 22 +++++++++++++---------
 1 file changed, 13 insertions(+), 9 deletions(-)

-- 
2.14.1

[bug#28738] [PATCH 1/5] gnu: python-apispec: Update to 0.25.3.

[Cyril Roelandt]

* gnu/packages/python.scm (python-apispec, python2-apispec): Update to 0.25.3.
---
 gnu/packages/python.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 594dd38e4..d36cbaf5a 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -15914,14 +15914,14 @@ complex datatypes to and from native Python datatypes.")
 (define-public python-apispec
   (package
     (name "python-apispec")
-    (version "0.22.0")
+    (version "0.25.3")
     (source
      (origin
       (method url-fetch)
       (uri (pypi-uri "apispec" version))
       (sha256
         (base32
-          "0y3jxmgp2d24am3hxl40f5rw9abb0r8037sagax3dv64h4n1azwq"))))
+          "0kxa8723zbisx10363yh4mmmn4higxrspymbjfz5zq8f644zagm9"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-pyyaml" ,python-pyyaml)))
-- 
2.14.1

[bug#28737] [PATCH 2/5] gnu: python-arrow: Update to 0.10.0.

[Cyril Roelandt]

* gnu/packages/python.scm (python-arrow, python2-arrow): Update to 0.10.0.
---
 gnu/packages/python.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index d36cbaf5a..52999997b 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -11939,13 +11939,13 @@ objects, patterned after the Mocha library for Ruby.")
 (define-public python-arrow
   (package
     (name "python-arrow")
-    (version "0.8.0")
+    (version "0.10.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "arrow" version))
               (sha256
                (base32
-                "1bz7hkdgpqcjs866y58z8jywpy7al0f4rxdr00bh2l5qddyw245j"))))
+                "08n7q2l69hlainds1byd4lxhwrq7zsw7s640zkqc3bs5jkq0cnc0"))))
     (build-system python-build-system)
     (native-inputs
      `(;; For testing
-- 
2.14.1

[bug#28740] [PATCH 3/5] gnu: python-alembic: Update to 0.9.5.

[Cyril Roelandt]

* gnu/packages/python.scm (python-alembic, python2-alembic): Update to 0.9.5.
---
 gnu/packages/python.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 52999997b..d2c081236 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -4902,20 +4902,21 @@ You might also want to install the following optional dependencies:
 (define-public python-alembic
   (package
     (name "python-alembic")
-    (version "0.8.10")
+    (version "0.9.5")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "alembic" version))
        (sha256
         (base32
-         "06br9sfqypnjlal6fsbnky3zb0askwcn3diz8k3kwa0qcblm0fqf"))))
+         "01gx2syqbaxh4hr9pf7pxhlb6p36qaf99140dy19lsx1paxb9p4b"))))
     (build-system python-build-system)
     (native-inputs
      `(("python-mock" ,python-mock)
        ("python-pytest-cov" ,python-pytest-cov)))
     (propagated-inputs
-     `(("python-sqlalchemy" ,python-sqlalchemy)
+     `(("python-dateutil" ,python-dateutil)
+       ("python-sqlalchemy" ,python-sqlalchemy)
        ("python-mako" ,python-mako)
        ("python-editor" ,python-editor)))
     (home-page "http://bitbucket.org/zzzeek/alembic")
-- 
2.14.1

[bug#28741] [PATCH 4/5] gnu: python-aniso8601: Update to 1.3.0.

[Cyril Roelandt]

* gnu/packages/python.scm (python-aniso8601, python2-aniso8601): Update to 1.3.0.
---
 gnu/packages/python.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index d2c081236..893d7ecf3 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -13427,14 +13427,14 @@ useful as a validator for JSON data.")
 (define-public python-aniso8601
   (package
     (name "python-aniso8601")
-    (version "1.1.0")
+    (version "1.3.0")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "aniso8601" version))
         (sha256
           (base32
-            "1k5mjg9iqbjfslb5prrsfz7dhlvi6s35p1jxq8dm87w1b7dn5i2g"))))
+            "1waj54iv3n3lw1fapbz8a93yjgrybgpc86wif5baxdh1arpj9df3"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-dateutil" ,python-dateutil)))
-- 
2.14.1

[bug#28742] [PATCH 5/5] gnu: Add python2-aniso8601.

[Cyril Roelandt]

* gnu/packages/python.scm (python2-aniso8601): New variable.
---
 gnu/packages/python.scm | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 893d7ecf3..875a394da 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -13446,6 +13446,9 @@ useful as a validator for JSON data.")
       "This package contains a library for parsing ISO 8601 datetime strings.")
     (license license:bsd-3)))
 
+(define-public python2-aniso8601
+  (package-with-python2 python-aniso8601))
+
 (define-public python-flask-restful
   (package
     (name "python-flask-restful")
-- 
2.14.1

[bug#28739] [PATCH 0/5] Update python{,2}-a*

[Leo Famulari]

[-- Attachment #1: Type: text/plain, Size: 381 bytes --]

On Sun, Oct 08, 2017 at 06:35:40AM +0200, Cyril Roelandt wrote:
> Hello,
> 
> This patch series provides updates for the python{,2}-a* packages that could
> "easily" be upgraded.
> 
> I rebuilt all the updated packages, and every package that depends on them, so
> this should be pretty safe.

Great, thanks! I guess you are planning to work through the whole
alphabet?

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 833 bytes --]

[bug#28739] [PATCH 0/5] Update python{,2}-a*

[Cyril Roelandt]

On 10/09/2017 09:22 PM, Leo Famulari wrote:
> Great, thanks! I guess you are planning to work through the whole
> alphabet?

Hehe. So, to give a bit more context: I'm trying to write an updated
version of my Guix backend for tox (the Python virtual environment
manager). One of the issues I have when trying it on real-world projects
is that our Python libraries are a bit outdated.

I wrote a small script that updates a set of python packages, rebuilds
them and also rebuilds the dependent packages. I'll probably publish it
at some point, since it might be useful for other people.

If it's OK with everybody, I'd like to push the simplest patches (those
that only change the version and the hash) without going through a
review first. WDYT?


Cyril.

[bug#28739] [PATCH 0/5] Update python{,2}-a*

[Leo Famulari]

[-- Attachment #1: Type: text/plain, Size: 1154 bytes --]

On Mon, Oct 09, 2017 at 09:49:13PM +0200, Cyril Roelandt wrote:
> Hehe. So, to give a bit more context: I'm trying to write an updated
> version of my Guix backend for tox (the Python virtual environment
> manager). One of the issues I have when trying it on real-world projects
> is that our Python libraries are a bit outdated.

Yeah, I'm glad you're working on this.

> If it's OK with everybody, I'd like to push the simplest patches (those
> that only change the version and the hash) without going through a
> review first. WDYT?

Sure, I think it's fine. HACKING says:

For patches that just add a new package, and a simple one, it’s OK to
commit [without going through the code review process], if you’re
confident (which means you successfully built it in a chroot setup, and
have done a reasonable copyright and license auditing.)  Likewise for
package upgrades, except upgrades that trigger a lot of rebuilds (for
example, upgrading GnuTLS or GLib.)  We have a mailing list for commit
notifications (guix-commits@gnu.org), so people can notice.  Before
pushing your changes, make sure to run ‘git pull --rebase’.

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 833 bytes --]

[bug#28739] [PATCH 0/5] Update python{,2}-a*

[Ludovic Courtès]

Leo Famulari <leo@famulari.name> skribis:

> On Mon, Oct 09, 2017 at 09:49:13PM +0200, Cyril Roelandt wrote:
>> Hehe. So, to give a bit more context: I'm trying to write an updated
>> version of my Guix backend for tox (the Python virtual environment
>> manager). One of the issues I have when trying it on real-world projects
>> is that our Python libraries are a bit outdated.
>
> Yeah, I'm glad you're working on this.
>
>> If it's OK with everybody, I'd like to push the simplest patches (those
>> that only change the version and the hash) without going through a
>> review first. WDYT?
>
> Sure, I think it's fine.

Definitely.  Just make sure to run your script that rebuilds dependents
before pushing, to be on the safe side.

Thanks for working on it!

Ludo’.

[bug#28739] bug#28793: 26.0.90; Compile error with Emacs 26 on macOS 10.13

[Alan Third]

[-- Attachment #1: Type: text/plain, Size: 3590 bytes --]

My first thought is that you need to install the xcode command line tools.
You do something like:

    xcode-select --install

(I'm using my phone, so I hope this is formatted reasonably.)

On 12 Oct 2017 7:20 a.m., "George Plymale II" <georgie@southernohio.net>
wrote:

So I tried compiling Emacs 26 on macOS 10.13. I configured with
`./configure' and everything went fine. However, when I ran `make', the
following error appeared:



/Applications/Xcode.app/Contents/Developer/usr/bin/make -C lib all
  CC       acl_entries.o
  CC       explicit_bzero.o
  CC       fpending.o
  CC       fstatat.o
  CC       getopt.o
  CC       getopt1.o
  CC       lstat.o
  CC       memrchr.o
  CC       mktime.o
  CC       open.o
open.c:75:27: error: unknown type name 'PROMOTED_MODE_T'
      mode = va_arg (arg, PROMOTED_MODE_T);
                          ^
1 error generated.
make[1]: *** [open.o] Error 1
make: *** [lib] Error 2



Upon inspecting this error, I see the following comment above the
offending code:

/* We have to use PROMOTED_MODE_T instead of mode_t, otherwise GCC 4
   creates crashing code when 'mode_t' is smaller than 'int'.  */

I also see the following output regarding `open.c' when I compile with
`make CFLAGS="-v"':



...
  CC       open.o
Apple LLVM version 9.0.0 (clang-900.0.37)
Target: x86_64-apple-darwin17.0.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/
XcodeDefault.xctoolchain/usr/bin
 "/Applications/Xcode.app/Contents/Developer/Toolchains/
XcodeDefault.xctoolchain/usr/bin/clang" -cc1 -triple
x86_64-apple-macosx10.13.0 -Wdeprecated-objc-isa-usage
-Werror=deprecated-objc-isa-usage -emit-obj -mrelax-all -disable-free
-disable-llvm-verifier -discard-value-names -main-file-name open.c
-mrelocation-model pic -pic-level 2 -mthread-model posix -mdisable-fp-elim
-fno-strict-return -masm-verbose -munwind-tables -target-cpu penryn
-target-linker-version 302.3 -v -dwarf-column-info -debugger-tuning=lldb
-coverage-notes-file /Users/my_username/path/to/emacs/lib/open.gcno
-resource-dir /Applications/Xcode.app/Contents/Developer/Toolchains/
XcodeDefault.xctoolchain/usr/lib/clang/9.0.0 -dependency-file deps/open.d
-MT open.o -MP -I . -I ../src -I . -I ./../src -Wno-switch
-Wno-pointer-sign -Wno-string-plus-int -Wno-unknown-attributes
-Wno-initializer-overrides -Wno-tautological-compare
-Wno-tautological-constant-out-of-range-compare -fdebug-compilation-dir
/Users/my_username/path/to/emacs/lib -ferror-limit 19 -fmessage-length 119
-stack-protector 1 -fblocks -fobjc-runtime=macosx-10.13.0
-fencode-extended-block-signature -fmax-type-align=16
-fdiagnostics-show-option -fcolor-diagnostics -o open.o -x c open.c
clang -cc1 version 9.0.0 (clang-900.0.37) default target
x86_64-apple-darwin17.0.0
ignoring duplicate directory "."
ignoring duplicate directory "../src"
#include "..." search starts here:
#include <...> search starts here:
 .
 ../src
 /usr/local/include
 /Applications/Xcode.app/Contents/Developer/Toolchains/
XcodeDefault.xctoolchain/usr/lib/clang/9.0.0/include
 /Applications/Xcode.app/Contents/Developer/Toolchains/
XcodeDefault.xctoolchain/usr/include
 /usr/include
 /System/Library/Frameworks (framework directory)
 /Library/Frameworks (framework directory)
End of search list.
open.c:75:27: error: unknown type name 'PROMOTED_MODE_T'
      mode = va_arg (arg, PROMOTED_MODE_T);
                          ^
1 error generated.
make[1]: *** [open.o] Error 1
make: *** [lib] Error 2



Anyone know how to fix this error? I'd hate to run into something like
this in a non-release-candidate release...

[-- Attachment #2: Type: text/html, Size: 4769 bytes --]

[bug#28739] bug#28793: 26.0.90; Compile error with Emacs 26 on macOS 10.13

[George Plymale II]

Thanks for the suggestion, but `xcode-select --install' returns:

xcode-select: error: command line tools are already installed, use "Software Update" to install updates

[bug#28739] bug#28793: 26.0.90; Compile error with Emacs 26 on macOS 10.13

[Ludovic Courtès]

Alan & George: you are emailing the wrong address.  See
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=28739>.

Ludo'.

[bug#28739] bug#28793: 26.0.90; Compile error with Emacs 26 on macOS 10.13

[George Plymale II]

> Alan & George: you are emailing the wrong address.  See
> <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=28739>.

Oops, sorry! I guess Alan accidentally replied to this thread and meant
to reply on `bug-gnu-emacs'. I replied to him and didn't realize we were
on the wrong thread!

[bug#28739] [PATCH 0/5] Update python{,2}-a*

[Christopher Baines]

[-- Attachment #1: Type: text/plain, Size: 1227 bytes --]

On Sun,  8 Oct 2017 06:35:40 +0200
Cyril Roelandt <tipecaml@gmail.com> wrote:

> Hello,
> 
> This patch series provides updates for the python{,2}-a* packages
> that could "easily" be upgraded.
> 
> I rebuilt all the updated packages, and every package that depends on
> them, so this should be pretty safe.
> 
> Cyril.
> ---
> Cyril Roelandt (5):
>   gnu: python-apispec: Update to 0.25.3.
>   gnu: python-arrow: Update to 0.10.0.
>   gnu: python-alembic: Update to 0.9.5.
>   gnu: python-aniso8601: Update to 1.3.0.
>   gnu: Add python2-aniso8601.
> 
>  gnu/packages/python.scm | 22 +++++++++++++---------
>  1 file changed, 13 insertions(+), 9 deletions(-)

Hey Cyril, 

When sending a patch series, please first send one message to
guix-patches@gnu.org, and then send subsequent patches to
NNN@debbugs.gnu.org to make sure they are kept together.

I've now attempted to merge this patch series (bugs 28737, 28738, 28739,
28740, 28741, 28742), and another (bugs 28676, 28677, 28678,
28679, 28680) together, which should mean that they act as one bug. I
think this has worked (although I've got debbugs-gnu in to such a state
now that it will only show me 28738... :( ).

Thanks,

Chris

[-- Attachment #2: OpenPGP digital signature --]
[-- Type: application/pgp-signature, Size: 963 bytes --]

[bug#28739] bug#28793: 26.0.90; Compile error with Emacs 26 on macOS 10.13

[Ludovic Courtès]

George Plymale II <georgie@southernohio.net> skribis:

>> Alan & George: you are emailing the wrong address.  See
>> <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=28739>.
>
> Oops, sorry! I guess Alan accidentally replied to this thread and meant
> to reply on `bug-gnu-emacs'. I replied to him and didn't realize we were
> on the wrong thread!

No problem.  Now, you’re welcome to contribute to Guix as well!  ;-)

Ludo’.

bug#28737: [PATCH 2/5] gnu: python-arrow: Update to 0.10.0.

[Ricardo Wurmus]

Cyril Roelandt <tipecaml@gmail.com> writes:

> * gnu/packages/python.scm (python-arrow, python2-arrow): Update to 0.10.0.

This has already been pushed to master.  Closing.

Thanks!

-- 
Ricardo

GPG: BCA6 89B6 3655 3801 C3C6  2150 197A 5888 235F ACAC
https://elephly.net