From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp11.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms5.migadu.com with LMTPS id +xj3Ku+gz2NI3AAAbAwnHQ (envelope-from ) for ; Tue, 24 Jan 2023 10:12:15 +0100 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp11.migadu.com with LMTPS id QBcpKu+gz2MwAwEA9RJhRA (envelope-from ) for ; Tue, 24 Jan 2023 10:12:15 +0100 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id BC58F160E6 for ; Tue, 24 Jan 2023 10:12:14 +0100 (CET) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pKFLZ-000741-I7; Tue, 24 Jan 2023 04:12:05 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pKFLW-00072E-Q7 for guix-patches@gnu.org; Tue, 24 Jan 2023 04:12:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pKFLW-0006hZ-En for guix-patches@gnu.org; Tue, 24 Jan 2023 04:12:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pKFLW-0003v7-6P for guix-patches@gnu.org; Tue, 24 Jan 2023 04:12:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#60997] [PATCH 3/4] gnu: Add python-phylophlan. Resent-From: Ricardo Wurmus Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 24 Jan 2023 09:12:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 60997 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Cc: 60997@debbugs.gnu.org X-Debbugs-Original-Cc: 60997@debbugs.gnu.org, debbugs-submit@debbugs.gnu.org Received: via spool by 60997-submit@debbugs.gnu.org id=B60997.167455149815024 (code B ref 60997); Tue, 24 Jan 2023 09:12:02 +0000 Received: (at 60997) by debbugs.gnu.org; 24 Jan 2023 09:11:38 +0000 Received: from localhost ([127.0.0.1]:55850 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pKFL8-0003uG-Cd for submit@debbugs.gnu.org; Tue, 24 Jan 2023 04:11:38 -0500 Received: from sender3-of-o59.zoho.com ([136.143.184.59]:21906) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pKFL5-0003u1-VK; Tue, 24 Jan 2023 04:11:36 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1674551493; cv=none; d=zohomail.com; s=zohoarc; b=A4PyS/ae9cUMPeVxRQzyd+ztefLctvWGfhU4CYTLL8d7NQsnMIa+C4SlBh7narUe/KmzUFyDiLDZLhQ40gPEggFE3rIc0JQo34f3PYLxG32J1F8JW8KjlOYGi6OZkjpfXBzdhy3o+JbuUxMWAPM/yrZxfXETnTyqfQ8hZXj+odY= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1674551493; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=TDUcQcE6mVm159kFQotX5iuzSWta6bqfHNVrkElKDug=; b=mxLqVOVod+ZviHCs4z087BbCSWG/6FST8DM2Ci06FV2sWIrh5hlZdihlbV7wEwHG6X6bdg5hyGaiYo4LKln6o4udborRLM/uLFzeVm4Bh1sXy74Yg55pmKL2D09yn7tdFCSJDTHeEXC/RZDikWue3JjwaIfZOfMPeju6M4K71IE= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1674551493; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=TDUcQcE6mVm159kFQotX5iuzSWta6bqfHNVrkElKDug=; b=QcJVY6tsCCEL6PVVAF83iPfeSrjfgDxqenYOfAleNZzcl0cU65cEluoT2XxeeRNm VNo2KuEHI6PUtZqp15n7lxgeU+jwLE3MLJ+N8oNP77R6rXl80M6bbGtyj3RUyVsB1mA z0F2s1DPM4MvrszbCn/qQS1+brP4qgu/0tc2rFic= Received: from localhost (196-108-142-46.pool.kielnet.net [46.142.108.196]) by mx.zohomail.com with SMTPS id 1674551491082793.5731211523502; Tue, 24 Jan 2023 01:11:31 -0800 (PST) References: <20230122004951.119277-1-madalinionel.patrascu@mdc-berlin.de> <20230122004951.119277-3-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.8.13; emacs 28.2 From: Ricardo Wurmus Date: Tue, 24 Jan 2023 10:10:20 +0100 In-reply-to: <20230122004951.119277-3-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87h6wge1q7.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN ARC-Seal: i=2; s=key1; d=yhetil.org; t=1674551535; a=rsa-sha256; cv=fail; b=flrFCdtCHjhmMiRoSAh0qQrQhmhRCLCxVNaEsLsr6tG2he0U0p9Ln1+8HjHfz5HVN5tkZp hfpGbOlK5fI/ZwD/vc5rfm3KO65ISlYg+aoZ42Ahpkm5q9ySeEJJWvfTRiloEENoH9dNU1 Le8pexmTRw5qO8AJ3k2qsbpJCz0KpkiimmPWWeilvFIgfW1r/UvT7MDwpU5RoFSB7bFKME VbLpTUOSIF11ndR7vApbmQjYJjoBqkN4nwtIc9Xw6TO2wt+tLXQTdaUCgNTlUdY/6jqTxL jZ8d3AFogTBqxTkVmRGi9fnnnBv+zNp1jUmMqKl311tbkkOvEMVvEIZ8QydmwQ== ARC-Message-Signature: i=2; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1674551535; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=TDUcQcE6mVm159kFQotX5iuzSWta6bqfHNVrkElKDug=; b=M0+L65eJ1mQVjxVUnJnlp5CAXTofDBcFp15vHeko0S9bTqgVTMgCmx4awnyNLox3Mm7+y0 6KMwDqZr16+5mkpmp94jH5etSviZKNZGGJnwqCQ0Ox6YngrQO9qe7ifc/vCbJcJpEQodG+ oqJi1+HeSxKdPTmykWX/zZ9rLj9cdJgZs2ajUVEgux4e9iUbpNmbL/PMH9cbE1btX2VwlM Fpot4rDVFx9WVczuYq2apJibRb/CUdxLtIIFdzI5+7S1klIRf/jBmxnhuHVAE7lSqc8/OT 6gRQJpNNUmAc49p5pZYICGLoswmuefAZn8q4np/QtuOjjBm8Xcha/rx8fZBL3g== ARC-Authentication-Results: i=2; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=elephly.net header.s=zoho header.b=QcJVY6ts; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org"; dmarc=none; arc=reject ("signature check failed: fail, {[1] = sig:zohomail.com:reject}") X-Migadu-Scanner: scn0.migadu.com X-Migadu-Spam-Score: 1.75 X-Spam-Score: 1.75 X-Migadu-Queue-Id: BC58F160E6 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=elephly.net header.s=zoho header.b=QcJVY6ts; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org"; dmarc=none; arc=reject ("signature check failed: fail, {[1] = sig:zohomail.com:reject}") X-TUID: PzANPdaksuGM M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > + (build-system python-build-system) Please use pyproject-build-system where possible. > + (arguments > + (list > + #:tests? #f ;pypi no tests There are no tests, nothing to do with pypi. > + #:phases > + #~(modify-phases %standard-phases > + ;;pypi does not provide the readme.md file > + (add-before 'build 'loose-readme-file-requirement > + (lambda _ > + (substitute* "setup.py" > + (("long_description") > + "#long_description"))))))) I changed this to just fetch the source from git. > + (propagated-inputs > + (list python-biopython This will become a problem down the line when combined with cmseq. --=20 Ricardo