From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id QIMTAXDXAGBCdQAA0tVLHw (envelope-from ) for ; Thu, 14 Jan 2021 23:44:48 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id SM1rOG/XAGCUJAAAbx9fmQ (envelope-from ) for ; Thu, 14 Jan 2021 23:44:47 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id C328B940309 for ; Thu, 14 Jan 2021 23:44:47 +0000 (UTC) Received: from localhost ([::1]:36568 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1l0CII-0000lB-FV for larch@yhetil.org; Thu, 14 Jan 2021 18:44:46 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:42170) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1l0CHd-0000F7-64 for guix-patches@gnu.org; Thu, 14 Jan 2021 18:44:05 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:56279) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1l0CHZ-0007nh-Se for guix-patches@gnu.org; Thu, 14 Jan 2021 18:44:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1l0CHZ-00028j-NV for guix-patches@gnu.org; Thu, 14 Jan 2021 18:44:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#45873] [PATCH] gnu: Add r-snapatac. References: <20210114195744.15053-1-madalinionel.patrascu@mdc-berlin.de> In-Reply-To: <20210114195744.15053-1-madalinionel.patrascu@mdc-berlin.de> Resent-From: Ricardo Wurmus Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 14 Jan 2021 23:44:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45873 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45873@debbugs.gnu.org Received: via spool by 45873-submit@debbugs.gnu.org id=B45873.16106678378208 (code B ref 45873); Thu, 14 Jan 2021 23:44:01 +0000 Received: (at 45873) by debbugs.gnu.org; 14 Jan 2021 23:43:57 +0000 Received: from localhost ([127.0.0.1]:39592 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1l0CHU-00028J-CR for submit@debbugs.gnu.org; Thu, 14 Jan 2021 18:43:57 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21104) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1l0CHR-000289-6Y for 45873@debbugs.gnu.org; Thu, 14 Jan 2021 18:43:54 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1610667830; cv=none; d=zohomail.com; s=zohoarc; b=jjCdTKHS4wBGN4iyH9ahlaIXodbjGftPDpLBA9LnCNCmMLDDz5zLkbpuwIvNmKt8oqAVnMEgTltTovl/8VtF+1Yr1hIiZ25eGQEnwF17ORDcgOkabYeEgusM6W4rVJGL/IWMSBB/ud8Ic/DGmaopVxtSbElxHx4azxchskpSOXI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1610667830; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:MIME-Version:Message-ID:Subject:To; bh=MmlPVJiws6YpSBSLAE+mqQ+50/E4cEo05mah/FE1hlA=; b=NNOuwh4aBGtDjvbL3jOViL+Sysvjt6XNaX367wA/+NbFdLXvfcYEj/iT3EMrTk4wGrqZ7zIUTfivLfxHKHE3Y4IrtsKWoONNMoDsLNoqpvWxEKRBO5KnQOYP24bFutCzsWR49+J+TS1IxA4oh4lz7WelCv8HHIXsZoaTiCHH69o= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1610667830; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:To:Cc:Subject:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=MmlPVJiws6YpSBSLAE+mqQ+50/E4cEo05mah/FE1hlA=; b=FoxDYcKyAlYvClSJ3vanN6H1AieJmfiziqneKol64GlmhmvRq5/wQOkX5c5fAGLc bbq3SHZLRYnh16BEwSGj8XOtju16VEoAt3BpJJn6cSYxgaFqwm3kZrsEQgobF+qbqF1 POq6VpHd8n68acayPnOmIpsBiZ58BjZpB5eRAe4U= Received: from localhost (p54ad4ef9.dip0.t-ipconnect.de [84.173.78.249]) by mx.zohomail.com with SMTPS id 1610667828528795.7766630830127; Thu, 14 Jan 2021 15:43:48 -0800 (PST) User-agent: mu4e 1.4.13; emacs 27.1 From: Ricardo Wurmus X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Fri, 15 Jan 2021 00:43:45 +0100 Message-ID: <87bldrccem.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: "Patrascu, Madalin Ionel" Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 0.64 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=elephly.net header.s=zoho header.b=FoxDYcKy; arc=reject (signature check failed: fail, {[1] = sig:zohomail.com:reject}); dmarc=none; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: C328B940309 X-Spam-Score: 0.64 X-Migadu-Scanner: scn0.migadu.com X-TUID: oZolWCt0NPnh Hi Madalin, thanks for the patch. It looks good to me but I have a few questions. The README file claims that the Python Snaptools must be installed. This package does not do this, so I suppose the package will fail when it=E2=80=99s run in an environment that does not have the Snaptools on the = PATH. Do you happen to have a package definition for the Snaptools as well, so that we could either propagate it or patch r-snapatac to retain references to the executables it provides? I also see references to Homer and other bioinfo tools, which are not provided by this package and which are not found among the inputs. Does it make sense to install this package when these tools are not available? --=20 Ricardo