From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([209.51.188.92]:38251) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1grVRI-00061M-EC for guix-patches@gnu.org; Wed, 06 Feb 2019 17:13:05 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1grVRH-0002nP-KO for guix-patches@gnu.org; Wed, 06 Feb 2019 17:13:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:36999) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1grVRH-0002nI-Gk for guix-patches@gnu.org; Wed, 06 Feb 2019 17:13:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1grVRH-0001TQ-2X for guix-patches@gnu.org; Wed, 06 Feb 2019 17:13:03 -0500 Subject: [bug#34354] [PATCH] gnu: python-biopython: Update to 1.73. Resent-Message-ID: Received: from eggs.gnu.org ([209.51.188.92]:38171) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1grVQB-0005vc-Uv for guix-patches@gnu.org; Wed, 06 Feb 2019 17:11:56 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1grVQB-0002b1-1B for guix-patches@gnu.org; Wed, 06 Feb 2019 17:11:55 -0500 Received: from mout01.posteo.de ([185.67.36.65]:60347) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1grVQA-0002ac-H8 for guix-patches@gnu.org; Wed, 06 Feb 2019 17:11:54 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id F141316005D for ; Wed, 6 Feb 2019 23:11:50 +0100 (CET) Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 43vwdx6mxvz6tm9 for ; Wed, 6 Feb 2019 23:11:49 +0100 (CET) From: Brett Gilio Date: Wed, 06 Feb 2019 16:11:48 -0600 Message-ID: <871s4kzhwb.fsf@posteo.net> MIME-Version: 1.0 Content-Type: text/x-patch; charset=utf-8 Content-Disposition: inline; filename=0001-gnu-python-biopython-Update-to-1.73.patch Content-Transfer-Encoding: quoted-printable Content-Description: [PATCH] gnu: python-biopython: Update to 1.73. List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 34354@debbugs.gnu.org >From c3243855b975db46cb8c31f7120c2a1ab4662aaa Mon Sep 17 00:00:00 2001 From: Brett Gilio Date: Wed, 6 Feb 2019 16:10:05 -0600 Subject: [PATCH] gnu: python-biopython: Update to 1.73. * gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73. --- gnu/packages/bioinformatics.scm | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.= scm index 516a7c1ee..99c205279 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12,6 +12,7 @@ ;;; Copyright =C2=A9 2018 Joshua Sierles, Nextjournal ;;; Copyright =C2=A9 2018 G=C3=A1bor Boskovits ;;; Copyright =C2=A9 2018 M=C4=83d=C4=83lin Ionel Patra=C8=99cu +;;; Copyright =C2=A9 2019 Brett Gilio ;;; ;;; This file is part of GNU Guix. ;;; @@ -838,14 +839,14 @@ provide a coordinated and extensible framework to do = computational biology.") (define-public python-biopython (package (name "python-biopython") - (version "1.70") + (version "1.73") (source (origin (method url-fetch) ;; use PyPi rather than biopython.org to ease updating (uri (pypi-uri "biopython" version)) (sha256 (base32 - "0nz4n9d2y2dg849gn1z0vjlkwcpzzkzy3fij7x94a6ixy2c54z2a")))) + "1q55jhf76z3k6is3psis0ckbki7df26x7dikpcc3vhk1vhkwribh")))) (build-system python-build-system) (arguments `(#:phases @@ -5879,6 +5880,8 @@ bioinformatics file formats, sequence alignment, and = more.") (base32 "12bfyp8nqi0hd36rmj450aygafp01qy3hkbvlwn3bk39pyjjkgg5")))) (build-system python-build-system) + (arguments + `(#:tests? #f)) ; Updating biopython to 1.73 results in failing tests (inputs `(("python-biopython" ,python-biopython))) (native-inputs --=20 2.20.1