* [bug#73230] [PATCH] gnu: Add r-scdesign2.
@ 2024-09-13 14:09 Afkhami, Navid
2024-11-01 11:25 ` bug#73230: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Afkhami, Navid @ 2024-09-13 14:09 UTC (permalink / raw)
To: 73230; +Cc: Afkhami, Navid
* gnu/packages/bioinformatics.scm (r-scdesign2): New variable.
Change-Id: I25599df1cb8493bc2d9cc1839b5232aee03bf848
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4653360792..8b722f7bf2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1184,6 +1184,33 @@ (define-public r-rhtslib12
developers of other R packages who wish to make use of HTSlib.")
(license license:lgpl2.0+))))
+(define-public r-scdesign2
+ (let ((commit "554f2c4b1a7ee6cc04969a287df9b3b77d7bb2fe")
+ (revision "1"))
+ (package
+ (name "r-scdesign2")
+ (version (git-version "1.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JSB-UCLA/scDesign2")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "09zkz6qdcx54092ab6761ja3pclax9xzana8dk8qvxrdbjshb8p7"))))
+ (properties `((upstream-name . "scDesign2")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-mass r-pscl))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/JSB-UCLA/scDesign2")
+ (synopsis "Statistical simulator for scRNA-seq with gene correlation")
+ (description
+ "This package offers a flexible statistical simulator for scRNA-seq data.
+It can generate data that captures gene correlation. Additionally, it allows
+for varying the number of cells and sequencing depth.")
+ (license license:expat))))
+
(define-public r-scenic
(let ((commit "cedf8490a634da550cea2c831544e5f7f14467d2")
(revision "1"))
base-commit: 98bc13b9ea5f22a60de6c289d59072638001e08e
--
2.34.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#73230: [PATCH] gnu: Add r-scdesign2.
2024-09-13 14:09 [bug#73230] [PATCH] gnu: Add r-scdesign2 Afkhami, Navid
@ 2024-11-01 11:25 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2024-11-01 11:25 UTC (permalink / raw)
To: 73230-done
Applied, thanks!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2024-09-13 14:09 [bug#73230] [PATCH] gnu: Add r-scdesign2 Afkhami, Navid
2024-11-01 11:25 ` bug#73230: " Ricardo Wurmus
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