[bug#46830] [PATCH Added hdf5-1.12-parallel-openmpi] * gnu/packages/maths.scm (hdf5-1.12-parallel-openmpi): New package based on HDF5 1.12.0

[zimoun <zimon.toutoune@gmail.com>]

Hi,

On Sun, 28 Feb 2021 at 07:33, Gerd Heber <gerd.heber@gmail.com> wrote:

> +(define-public hdf5-1.12-parallel-openmpi
> +  (package/inherit hdf5-1.12
> +    (name "hdf5-1.12-parallel-openmpi")
> +    (inputs
> +     `(("mpi" ,openmpi)
> +       ,@(package-inputs hdf5)))
> +    (arguments
> +     (substitute-keyword-arguments (package-arguments hdf5)
> +       ((#:configure-flags flags)
> +        ``("--enable-parallel"
> +           ,@(delete "--enable-cxx"
> +                     (delete "--enable-threadsafe" ,flags))))
> +       ((#:phases phases)
> +        `(modify-phases ,phases
> +           (add-after 'build 'mpi-setup
> +             ,%openmpi-setup)
> +           (add-before 'check 'patch-tests
> +             (lambda _
> +               ;; OpenMPI's mpirun will exit with non-zero status if it
> +               ;; detects an "abnormal termination", i.e. any process not
> +               ;; calling MPI_Finalize().  Since the test is explicitly
> +               ;; avoiding MPI_Finalize so as not to have at_exit and thus
> +               ;; H5C_flush_cache from being called, mpirun will always
> +               ;; complain, so turn this test off.
> +               (substitute* "testpar/Makefile"
> +                 (("(^TEST_PROG_PARA.*)t_pflush1(.*)" front back)
> +                  (string-append front back "\n")))
> +               (substitute* "tools/test/h5diff/testph5diff.sh"
> +                 (("/bin/sh") (which "sh")))
> +               #t))))))
> +    (synopsis "Management suite for data with parallel IO support")))
> +

Why duplicates?  Something like:

--8<---------------cut here---------------start------------->8---
(define-public hdf5-1.12-parallel-openmpi
  (package/inherit hdf5-parallel-openmpi
    (version (package-version hdf5-1.12))
    (source (package-source hdf5-1.12)))
--8<---------------cut here---------------end--------------->8---

seems simpler.


All the best,
simon