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Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Tue, 31 Oct 2023 11:00:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 66843 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <66843@debbugs.gnu.org> Cc: Ricardo Wurmus X-Debbugs-Original-Xcc: Ricardo Wurmus Received: via spool by 66843-submit@debbugs.gnu.org id=B66843.169874999622971 (code B ref 66843); Tue, 31 Oct 2023 11:00:02 +0000 Received: (at 66843) by debbugs.gnu.org; 31 Oct 2023 10:59:56 +0000 Received: from localhost ([127.0.0.1]:47540 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qxmTU-0005yR-7Q for submit@debbugs.gnu.org; Tue, 31 Oct 2023 06:59:56 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:34597) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qxmT7-0005wG-4o for 66843@debbugs.gnu.org; Tue, 31 Oct 2023 06:59:33 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1698749933; x=1700564334; bh=iXOBHClnUyh2O110+4gIdflbCSzuI14uOqCmac0L8NM=; b=SEiKAThOclZ0 81UstWXCIFh7xD64fd8rtKZJNUuoetYdaXOWLDIR0ernSQvXCoPZNxMiGPmLem7R 2mIyQtQv1BEOetRGNGu2XyBSTQFpM5n3xy822/1KX/yn8KlCQOlUOlACDKm69nGz nsMbzvOCPAhPRQViGHEPznlYiKD9pgs= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 556D73001C1 for <66843@debbugs.gnu.org>; Tue, 31 Oct 2023 11:58:53 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Tue, 31 Oct 2023 11:58:52 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Tue, 31 Oct 2023 11:57:20 +0100 Message-ID: <7d5ca947d109a9ef6a92f861b116242281ed2314.1698749849.git.madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 In-Reply-To: <4d5576bdd09911a6a51bbe87a1b905bd07ca0c4b.1698749849.git.madalinionel.patrascu@mdc-berlin.de> References: <4d5576bdd09911a6a51bbe87a1b905bd07ca0c4b.1698749849.git.madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27968.007 X-TM-AS-Result: No-10--5.211400-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCTiEPRj9j9rvwTlc9CcHMZerwqxtE531VIPc XuILVCbaRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v/Exmr5hqNL1qY5ZGw7wyeH2il Wqs4D9IkPBhEt91+1lhJTjjs9yT6Yo8WMkQWv6iV3LAytsQR4e42j49Ftap9Ee3/K3TeOMBiXf5 sC39gVVFkl4TmW/y09NaUDYe1dhMffCWXRNP0OLA+BKwLZedUQH8FerAT0dJY= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.211400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27968.007 X-TM-SNTS-SMTP: 59C5E6E31E6AEB1FA571339F88D5CF173394853F18F91E6D4D7B31CDFCF84D8C2000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US X-Migadu-Queue-Id: BC81964B12 X-Migadu-Scanner: mx12.migadu.com X-Migadu-Spam-Score: -3.91 X-Spam-Score: -3.91 X-TUID: m/uDsNLeXHCX * gnu/packages/bioconductor.scm (r-r4rna): New variable. Change-Id: I1bde2a17b0ba4a97fa54161744f048dbfaf2217a --- gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index dee72de2b7..6a3606b399 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7779,6 +7779,29 @@ (define-public r-r3cseq 3C-seq assay.") (license license:gpl3))) +(define-public r-r4rna + (package + (name "r-r4rna") + (version "1.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "R4RNA" version)) + (sha256 + (base32 "1i4c9477xsp3hq5kxydrimhl6g8vshwbqgnhap5n1ykxbsval1pp")))) + (properties `((upstream-name . "R4RNA"))) + (build-system r-build-system) + (propagated-inputs (list r-biostrings)) + (home-page "https://www.e-rna.org/r-chie/") + (synopsis "RNA visualization and analysis") + (description + "This package provides a package for RNA basepair analysis, including the +visualization of basepairs as arc diagrams for easy comparison and annotation of +sequence and structure. Arc diagrams can additionally be projected onto +multiple sequence alignments to assess basepair conservation and covariation, +with numerical methods for computing statistics for each.") + (license license:gpl3))) + (define-public r-raggedexperiment (package (name "r-raggedexperiment") -- 2.41.0