From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp10.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms5.migadu.com with LMTPS id kLJgG/Nw1mMBdgEAbAwnHQ (envelope-from ) for ; Sun, 29 Jan 2023 14:13:23 +0100 Received: from aspmx1.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp10.migadu.com with LMTPS id 6Gd3GvNw1mOLCAAAG6o9tA (envelope-from ) for ; Sun, 29 Jan 2023 14:13:23 +0100 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id F1150B76C for ; Sun, 29 Jan 2023 14:13:22 +0100 (CET) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pM7UW-000370-5A; Sun, 29 Jan 2023 08:13:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pM7UV-00035C-0h for guix-patches@gnu.org; Sun, 29 Jan 2023 08:13:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pM7UU-0007jW-Mr for guix-patches@gnu.org; Sun, 29 Jan 2023 08:13:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pM7UU-0003Zi-HK for guix-patches@gnu.org; Sun, 29 Jan 2023 08:13:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61148] [PATCH 1/5] gnu: intervaltree: Update to 0.1-1.aa59377. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 29 Jan 2023 13:13:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61148 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61148@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 61148-submit@debbugs.gnu.org id=B61148.167499797113678 (code B ref 61148); Sun, 29 Jan 2023 13:13:02 +0000 Received: (at 61148) by debbugs.gnu.org; 29 Jan 2023 13:12:51 +0000 Received: from localhost ([127.0.0.1]:42423 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pM7UI-0003YX-J1 for submit@debbugs.gnu.org; Sun, 29 Jan 2023 08:12:50 -0500 Received: from mail-ej1-f51.google.com ([209.85.218.51]:36557) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pM7UG-0003YC-UK for 61148@debbugs.gnu.org; Sun, 29 Jan 2023 08:12:49 -0500 Received: by mail-ej1-f51.google.com with SMTP id kt14so24986212ejc.3 for <61148@debbugs.gnu.org>; Sun, 29 Jan 2023 05:12:48 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:sender:from:to:cc:subject:date :message-id:reply-to; bh=3AsLpxDeV25H4eZflOnf1flD4aeJ9FI3BgMFmWDDlug=; b=EjwAfPk9xNKk9YUpAX4Ol5Mcs4VUcewtY9IG2ZoZUBrlwl06EF5aHPbXuDPe9tmOrg KUC6HSjalxKhICUkGFNd3dhS1iWFgtMC0Q0DeaKEzsEueXEEfSNToQ0gtqdtEDt0F9bR EKKWmiGg+E+/SXM2oAHOG3vvsjFH/DaV5+jT626YdZdpHr3TODoYelGg/cO1u8W3LS1v LhtLrTQ3HDGk+bcThsf5uk+9vfoINcy7O5d4t6VPhRwBLZQqG9pODTkhEY/9g6oOrq2G vDeaak/j/AirL8QDtmsblZTAKo4TudkhH9Dv722dalVacaqKELOtoXdgEnEgtpjR9HGT z/OA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:sender:x-gm-message-state:from :to:cc:subject:date:message-id:reply-to; bh=3AsLpxDeV25H4eZflOnf1flD4aeJ9FI3BgMFmWDDlug=; b=to79b4MOVZuq3DTDr4JHR+mVyTTKVimTf6BJVg1G2yknrKLNuFm9i6v9fZxRtY2OYm 1Bv3sFkbsU5+fk2j81y1Yc0jvdFZOX/hrJVIP3mSdlWqldBNaEtkC4y+2hKfG1wejafu JEbGjAGuAELzmHQG828jFuF+c7oIknHH4iPi1o851rC0R7PDh2EEuhb98UZJEjuJKEuw KRQmK3VBGQAgvT+Mwp6bsgazbCFUcc4/IQxtqzaZY6itUTN7I3bqElUkVOmMuj0Tms9A aS6YJGoTX+o2HELhAuDMHuRi6p3fcDUTW/GY4oWe6GwY9hSRwkrrdNoN8k7djCwkBMsW yWuQ== X-Gm-Message-State: AO0yUKUJLHDDFwkrpFdYhO3eIhEB6yqIJL69w68F+VdFpD9EB4Dr2EDu huGKkS7827BSOTU9dGNOiZRfHfv9GfB1+Q== X-Google-Smtp-Source: AK7set9/fOHjDjpF2SCWoxboNc4vY45+Sp2dGReO9Cd+JFE6rViJLB2OegdQtdrQOswfGRZHQu/8iw== X-Received: by 2002:a17:906:171a:b0:878:69bc:2a8 with SMTP id c26-20020a170906171a00b0087869bc02a8mr12646640eje.69.1674997961717; Sun, 29 Jan 2023 05:12:41 -0800 (PST) Received: from localhost ([141.226.15.115]) by smtp.gmail.com with ESMTPSA id gn19-20020a1709070d1300b008512e1379dbsm5429176ejc.171.2023.01.29.05.12.40 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sun, 29 Jan 2023 05:12:41 -0800 (PST) From: Efraim Flashner Date: Sun, 29 Jan 2023 15:12:34 +0200 Message-Id: <4fd1568af1aa4bafb18a1efbcdfd084ca6b18711.1674997469.git.efraim@flashner.co.il> X-Mailer: git-send-email 2.39.1 In-Reply-To: References: MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1674998003; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=3AsLpxDeV25H4eZflOnf1flD4aeJ9FI3BgMFmWDDlug=; b=Bh87nnLiNFYwbcSwq9OSMU3u3SGSmdgr28GTcPqT2ug9BnAGavzotm2PGaP57fWPk+nAaO qxZZ0XYPfYUsFRGfvDRGrImpt/uX2zMukWPXAw7u3rHj18i78Gc96yXysIipPNOG59EuBd fVXjjoV/ZuPIzLANvvSjaUfCvDigfgBJGrWNIRpyb2c1x5QKXPiDKmzwP2R2GqgKq4Dk5J snzN8cCVXpNLuH3hGLmGAoujeWhg0tkl7H3PjiN4ePmtSKYNUo68g3QvDpnYi9C3IMXSoI EkWMLnzGbFrHy8y29ICYHU5D/w3HkhxIoq24QVsgUTVA66IXREO1gQ85nEriwg== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=EjwAfPk9; dmarc=none; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" ARC-Seal: i=1; s=key1; d=yhetil.org; t=1674998003; a=rsa-sha256; cv=none; b=TqPrjeDlMUKjMSDcCT5v27SZhfeDpjhYceGPm5Nwi0h/NkSp8tqLzVoivPORD0Rb//iS4d MUywjX9sELaPKr1TuJVLstLUf9dYUZWsOWecCqusFqX7DWc9qG92L/oDtVfg+3zU79d+tk WY1okxf9FQGL1jgleMGpeN/tIKJRxQAW15w2xpkXmMu8lvtsoZEz/EsJglQ43JIvD5ukG0 fWHrVYG+sM9AVtWT9ybvmsTMOdTzZcxuZCk6OArI0YftU7HNCg5y8p7doCo0R0/r7LLXs+ rVe0lSICPT8CRf6QnU6hQpl0fl4aerM/wOSShxwOR9y6khVnFi+6YX18khHSWw== X-Spam-Score: 1.92 X-Migadu-Spam-Score: 1.92 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=EjwAfPk9; dmarc=none; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: F1150B76C X-Migadu-Scanner: scn1.migadu.com X-TUID: zKEgmvgpAp81 * gnu/packages/bioinformatics.scm (intervaltree): Update to 0.1-1.aa59377. [arguments]: Fix cross-compiling. --- gnu/packages/bioinformatics.scm | 17 ++++++++++------- 1 file changed, 10 insertions(+), 7 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8c75607a65..5cea726f8e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13632,10 +13632,10 @@ (define-public gffcompare license:artistic2.0))))) ;license for gclib (define-public intervaltree - (let ((commit "b90527f9e6d51cd36ecbb50429e4524d3a418ea5")) + (let ((commit "aa5937755000f1cd007402d03b6f7ce4427c5d21")) (package (name "intervaltree") - (version (git-version "0.0.0" "1" commit)) + (version (git-version "0.1" "1" commit)) (source (origin (method git-fetch) @@ -13644,15 +13644,18 @@ (define-public intervaltree (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "0rgv6q5fl4x5d74n6p5wvdna6zmbdbqpb4jqqh6vq3670gn08xad")))) + (base32 "0p9aphy6sc01dg67xzqpnhvjmk21xa380bpfbkz24a23s6krhjwl")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; No tests. + (list + #:tests? #f ; No tests. #:make-flags - ,#~(list (string-append "PREFIX=" #$output) "DESTDIR=\"\"") + #~(list (string-append "PREFIX=" #$output) + (string-append "CXX=" #$(cxx-for-target)) + "DESTDIR=") #:phases - (modify-phases %standard-phases - (delete 'configure)))) ; There is no configure phase. + #~(modify-phases %standard-phases + (delete 'configure)))) ; There is no configure phase. (home-page "https://github.com/ekg/intervaltree") (synopsis "Minimal C++ interval tree implementation") (description "An interval tree can be used to efficiently find a set of -- Efraim Flashner אפרים פלשנר GPG key = A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted