From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id fIy5Chd2/2A7sgAAgWs5BA (envelope-from ) for ; Tue, 27 Jul 2021 04:57:27 +0200 Received: from aspmx1.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id KLLZBRd2/2CeZQAA1q6Kng (envelope-from ) for ; Tue, 27 Jul 2021 02:57:27 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id C2EA72B1B4 for ; Tue, 27 Jul 2021 04:57:26 +0200 (CEST) Received: from localhost ([::1]:34802 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1m8DHZ-0004u1-S2 for larch@yhetil.org; Mon, 26 Jul 2021 22:57:25 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:50786) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1m8DHD-0004kn-74 for guix-patches@gnu.org; Mon, 26 Jul 2021 22:57:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:40364) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1m8DHC-0006Bx-66 for guix-patches@gnu.org; Mon, 26 Jul 2021 22:57:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1m8DHB-0008Ow-MY for guix-patches@gnu.org; Mon, 26 Jul 2021 22:57:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#49729] [PATCH core-updates 02/20] gnu: clipper: Remove obsolete phase. 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DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=mgsn.dev; s=key1; t=1627354613; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; bh=MYB92CXjk1fXosHiNCWyJsGPkca4XopjRznThM4k2Ag=; b=arTyTCeIOlHJkPHGviYuGtGlTAt++XxxJKYR0P7eJSLCMEV6sRAatGPLrYMpvTkq5Epqeh hSRWWirXbXtQg5zd0YwHSwajv5v8SaqL9A+2ZiioW1GVmvuUilI82LZ6DjaaTyUnnOlG7P o16f8rbIztpqUvwuxlho9T+WSTb+TUY= From: Sarah Morgensen Date: Mon, 26 Jul 2021 19:56:31 -0700 Message-Id: <43b263936417b9e8ae2725e35c69f9168432c24a.1627351168.git.iskarian@mgsn.dev> In-Reply-To: References: MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Migadu-Auth-User: iskarian@mgsn.dev X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1627354646; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=MYB92CXjk1fXosHiNCWyJsGPkca4XopjRznThM4k2Ag=; b=R4+aa5fIJ3YXrX9+esK6mnJNm+Rra1Oxb/iVWVc+OqKgRk5GYTHd7+6P/LgJoK5I5eXYCW TdXWta6hjV031N4fzqJZm/IhvqAR968yWQL9vbiOZIEi7sEXg4SVJb36kTL+vueOY5KsFr 3E64/GJPkU/qq1vp2jXe2eJyBQ0M3tc2vPNQGcNoX7IwNidavkmhTIbW1FY6NRFNiTS1jE 3dJARi1l2i0hi3FyeRBCjITR2c6J78rq17kTGKfqN3qijIoV9Is6Y9fkj+K7xw94DuH/NB ub1wsNNQO18MagRDyyCNRlRIUQErGd9Cv3q6q8/2BzBobJBNtm3JuNNwhxQm3A== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1627354646; a=rsa-sha256; cv=none; b=qtFiJyZ0fEKObO9YFeH7A/AK/aKm4vJQ5Bmbh7EZApkyQt+DCqEmn1+9q50m8jzZ0Bo35j o8lwgXSQetko57QZOg9ATg+O62GDG8P0Ad2BgYd61eIFOzoIDJ9dG2LX7OAFNJwPBl0Vuj Rm6qDeIbj9J34ePonxMIz6jrFVERSqcs09b02naGY4Urfv11qm0FoNaktGYlnqq6NvzeXb wYlkH4wKqAWLAKGS83/Zm6bYLVcTxSEUngO6XKf5zhNcSmIAsBMVPXz5NEtLHJceoM7Gnu 4tZ6WJmzncxvBPK7R0MzkNfAWhDBxpkQKHek5EGE9UQL09Ovn5byXv4fNu9J1w== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mgsn.dev header.s=key1 header.b=arTyTCeI; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mgsn.dev (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: 3.68 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mgsn.dev header.s=key1 header.b=arTyTCeI; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mgsn.dev (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: C2EA72B1B4 X-Spam-Score: 3.68 X-Migadu-Scanner: scn0.migadu.com X-TUID: qRHIneZAytyc * gnu/packages/bioinformatics.scm (clipper)[arguments]<#:phases>: Remove 'make-files-writable phase. --- gnu/packages/bioinformatics.scm | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa9a1328f0..f027da3ce7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2303,17 +2303,6 @@ databases.") (base32 "1bcag4lb5bkzsj2vg7lrq24aw6yfgq275ifrbhd82l7kqgbbjbkv")))) (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'reset-gzip-timestamps 'make-files-writable - (lambda* (#:key outputs #:allow-other-keys) - ;; Make sure .gz files are writable so that the - ;; 'reset-gzip-timestamps' phase can do its work. - (let ((out (assoc-ref outputs "out"))) - (for-each make-file-writable - (find-files out "\\.gz$")) - #t)))))) (inputs `(("htseq" ,htseq) ("python-pybedtools" ,python-pybedtools) -- 2.31.1