unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <66966@debbugs.gnu.org>
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#66966] [PATCH 03/13] gnu: Add r-bsgenome-ecoli-ncbi-20080805.
Date: Mon, 6 Nov 2023 12:06:39 +0100	[thread overview]
Message-ID: <39fc6265bb8381c1eb751d96f6c7f06b56710049.1699268809.git.madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <302230715db60dbcab23676e1c67c53a567884e2.1699268809.git.madalinionel.patrascu@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-bsgenome-ecoli-ncbi-20080805):
    New variable.

Change-Id: Ic42527fa334be4c23ebe2e19461571d899db77ca
---
 gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 47931061af..40402f798f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -395,6 +395,28 @@ (define-public r-bsgenome-drerio-ucsc-danrer11
 as provided by UCSC (danRer11, May 2017) and stored in Biostrings objects.")
     (license license:artistic2.0)))
 
+(define-public r-bsgenome-ecoli-ncbi-20080805
+  (package
+    (name "r-bsgenome-ecoli-ncbi-20080805")
+    (version "1.3.1000")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "BSgenome.Ecoli.NCBI.20080805" version
+                              'annotation))
+       (sha256
+        (base32 "1l7mjyys1kaq4mbia9jamyw6sd0ij1wypwxvwy8aksan3gcfnh27"))))
+    (properties `((upstream-name . "BSgenome.Ecoli.NCBI.20080805")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-bsgenome))
+    (home-page
+     "https://bioconductor.org/packages/BSgenome.Ecoli.NCBI.20080805")
+    (synopsis "Escherichia coli full genomes")
+    (description
+     "Escherichia coli full genomes for several strains as provided by NCBI on
+2008/08/05 and stored in Biostrings objects.")
+    (license license:artistic2.0)))
+
 (define-public r-bsgenome-hsapiens-1000genomes-hs37d5
   (package
     (name "r-bsgenome-hsapiens-1000genomes-hs37d5")
-- 
2.41.0





  parent reply	other threads:[~2023-11-06 11:27 UTC|newest]

Thread overview: 15+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-11-06 10:59 [bug#66966] [Patch] gnu: Add r-bcrank, r-bbcanalyzer, r-baynorm, r-bb, r-bayesspace, r-rcppdist, r-bayesknockdown, r-basicstarrseq, r-basics, r-basic4cseq, r-bsgenome-ecoli-ncbi-20080805, r-bags and r-breastcancervdx Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 01/13] gnu: Add r-breastcancervdx Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 02/13] gnu: Add r-bags Mădălin Ionel Patrașcu
2023-11-06 11:06   ` Mădălin Ionel Patrașcu [this message]
2023-11-06 11:06   ` [bug#66966] [PATCH 04/13] gnu: Add r-basic4cseq Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 05/13] gnu: Add r-basics Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 06/13] gnu: Add r-basicstarrseq Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 07/13] gnu: Add r-bayesknockdown Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 08/13] gnu: Add r-rcppdist Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 09/13] gnu: Add r-bayesspace Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 10/13] gnu: Add r-bb Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 11/13] gnu: Add r-baynorm Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 12/13] gnu: Add r-bbcanalyzer Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 13/13] gnu: Add r-bcrank Mădălin Ionel Patrașcu
2023-11-13 14:09   ` bug#66966: [PATCH 01/13] gnu: Add r-breastcancervdx Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=39fc6265bb8381c1eb751d96f6c7f06b56710049.1699268809.git.madalinionel.patrascu@mdc-berlin.de \
    --to=madalinionel.patrascu@mdc-berlin.de \
    --cc=66966@debbugs.gnu.org \
    --cc=rekado@elephly.net \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).