From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:bcc0::]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id aI+0DX3eeWCzVQAAgWs5BA (envelope-from ) for ; Fri, 16 Apr 2021 20:59:09 +0200 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id 0JgmB33eeWCNfQAAbx9fmQ (envelope-from ) for ; Fri, 16 Apr 2021 18:59:09 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id D91C51ECEA for ; Fri, 16 Apr 2021 20:59:08 +0200 (CEST) Received: from localhost ([::1]:60436 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lXTgK-00038r-1O for larch@yhetil.org; Fri, 16 Apr 2021 14:59:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49438) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lXTgF-00036t-1s for guix-patches@gnu.org; Fri, 16 Apr 2021 14:59:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:58396) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lXTgE-0003cU-Q2 for guix-patches@gnu.org; Fri, 16 Apr 2021 14:59:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lXTgE-0007tM-Ob for guix-patches@gnu.org; Fri, 16 Apr 2021 14:59:02 -0400 Subject: bug#47826: [PATCH] gnu: Update blast+ to 2.11.0. Resent-From: Roel Janssen Original-Sender: "Debbugs-submit" Resent-To: guix-patches@gnu.org Resent-Date: Fri, 16 Apr 2021 18:59:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: cc-closed 47826 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Leo Famulari Cc: 47826-done@debbugs.gnu.org Mail-Followup-To: 47826@debbugs.gnu.org, roel@gnu.org, roel@gnu.org Received: via spool by 47826-done@debbugs.gnu.org id=D47826.161859952030302 (code D ref 47826); Fri, 16 Apr 2021 18:59:02 +0000 Received: (at 47826-done) by debbugs.gnu.org; 16 Apr 2021 18:58:40 +0000 Received: from localhost ([127.0.0.1]:41708 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXTfs-0007sg-Hm for submit@debbugs.gnu.org; Fri, 16 Apr 2021 14:58:40 -0400 Received: from eggs.gnu.org ([209.51.188.92]:36726) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXTfr-0007sT-70 for 47826-done@debbugs.gnu.org; Fri, 16 Apr 2021 14:58:39 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:46572) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lXTfl-0003I7-R3; Fri, 16 Apr 2021 14:58:33 -0400 Received: from 2001-1c02-0b18-2900-222e-248e-9586-e52d.cable.dynamic.v6.ziggo.nl ([2001:1c02:b18:2900:222e:248e:9586:e52d]:52934) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1lXTfk-0002fa-2G; Fri, 16 Apr 2021 14:58:33 -0400 Message-ID: <26f83a2fd74411cd8da7f1aa0f36dfe44e115f33.camel@gnu.org> From: Roel Janssen Date: Fri, 16 Apr 2021 20:58:29 +0200 In-Reply-To: References: Content-Type: text/plain; charset="UTF-8" User-Agent: Evolution 3.38.4 (3.38.4-1.fc33) MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1618599549; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-to: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post; bh=cS4Ot15KspMpUn+xX2gjFTU2wekb88n8wWFquFZMddw=; b=qCdlkMspLmdrgmtZODxzt/6mpa19SkkS/s0R8Gxz1QLypM3SiVWEiInmdZ1wB1fmjUsmSd wwqz0Qd67VTz/F1QQhNIRjrs6PMlu5AlncxpJxYlHSjUM6m7LuY3XEIFbyHl6WJQ110Nul 118FuPj9DxoiYWigtXgS/q3o4qLZAU5hotcIs9+VPe56soYsusuUFKRwHgzZoLPB4vVzIh 7+6XnO4xr54OwpirkyNaiF8qfmwS588SyRb1+1Qo1Atd0n9wdFSQ9hQ2XUrAwrd/6fBPHs iZSk5dmosaUVb2UUiOFS207vJxI24ePnuy+ytx5uSiBEe2B54UCnMANBXv5vNw== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1618599549; a=rsa-sha256; cv=none; b=KOdWi5lpnPfwz70MfeZrXobEpRm4DRGg342p/tdp+vB+jdaUNPMRmc06cAkxwviCTnEErh xzxM376QSSgpCsUsko/anUPtKXxP8mlkxPN6BZhp2cRgi9qlilAA/t0d1Sai/AXjVnHfjo BpuHFHFQcg/Rcubnf4VqVCES0uzrgrQRatd4nwWr5JEFsn7nRd8QMJa5BhnMKgMAO3ua4r CYijNcRRvOnLzarF8WI0NnitSLpELlHpu0RR11Rts6+JpDI4R5sRB2lg8FjyCEHvmdEOMr xQNLpw44wWYtL0/J/8zVN1SQHa1LMO4q2efYPqUH5lYv91dVwXhJGaIym8RnTA== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: -2.94 Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: D91C51ECEA X-Spam-Score: -2.94 X-Migadu-Scanner: scn0.migadu.com X-TUID: a0HhlgV8dsIY On Fri, 2021-04-16 at 14:22 -0400, Leo Famulari wrote: > On Fri, Apr 16, 2021 at 08:14:27PM +0200, Roel Janssen wrote: > > Let's see if I got this right: > > $ ./pre-inst-env guix refresh --list-dependent blast+ > > /home/roel/Programming/guix/gnu/packages/bioinformatics.go > > Building the following 2 packages would ensure 2 dependent packages > > are > > rebuilt: roary@3.12.0 proteinortho@6.0.14 > > > > So I built roary and proteinortho with the blast+ patch applied, > > and > > both build fine. > > > > Can I conclude from this that packages depending on blast+ still > > build > > fine? > > Yes, exactly! Thanks for testing and please push :) > Thank you for your help! I pushed this patch in c3926120ba5ea76f531541b7926ccb6739575e0e. Kind regards, Roel Janssen