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From: Nicolas Graves via Guix-patches via <guix-patches@gnu.org>
To: 74035@debbugs.gnu.org
Cc: Nicolas Graves <ngraves@ngraves.fr>
Subject: [bug#74035] [PATCH v3 1/8] gnu: bart: Update to 0.9.00. [security fixes]
Date: Wed,  6 Nov 2024 00:10:10 +0100	[thread overview]
Message-ID: <20241105231235.21106-2-ngraves@ngraves.fr> (raw)
In-Reply-To: <20241105231235.21106-1-ngraves@ngraves.fr>

This fixes bart reproducibility and CVE-2022-45387.

* gnu/packages/image-processing.scm (bart): Update to 0.9.00.
---
 gnu/packages/image-processing.scm | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm
index a79eaf6aed..3a7c67362f 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -115,20 +115,19 @@ (define-module (gnu packages image-processing)
   #:use-module (ice-9 match)
   #:use-module (srfi srfi-1))
 
-;; TODO: this is not reproducible.
 (define-public bart
   (package
     (name "bart")
-    (version "0.8.00")
+    (version "0.9.00")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/mrirecon/bart")
-             (commit "eacc67b95cf128487ecc48f0e6541ea4dca08818")))
+             (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "05lcf7c3g7ms5h82bw1mi4kzkdv5wpqi1zrfhqfkgbcpd3irj6aq"))))
+        (base32 "0mj6jmw31rsnvqmpfqahhj4cy9iv5xgrhzmcsrikdz5dgd45lmjz"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -140,6 +139,7 @@ (define-public bart
                       "OPENBLAS=1"
                       "SCALAPACK=1"
                       (string-append "BLAS_BASE=" #$(this-package-input "openblas"))
+                      (string-append "CC=" #$(cc-for-target))
                       (string-append "FFTW_BASE=" #$(this-package-input "fftw")))
       #:parallel-build? #false ;leads to non-deterministic output
       #:phases
-- 
2.46.0





  reply	other threads:[~2024-11-05 23:13 UTC|newest]

Thread overview: 88+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2024-10-26 22:29 [bug#74035] [PATCH 00/24] [security fixes] for near-leaf packages Nicolas Graves via Guix-patches via
2024-10-26 22:42 ` [bug#74035] [PATCH 01/24] gnu: python-django-4.2: Update to 4.2.16. [security fixes] Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 02/24] gnu: maradns: Update to 3.5.0036. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 03/24] gnu: maradns: Improve style Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 04/24] gnu: libmobi: Update to 0.12. [security fixes] Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 05/24] gnu: bart: Update to 0.9.00. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 06/24] gnu: wireshark: Update to 4.4.1. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 07/24] gnu: pam-u2f: Update to 1.3.0. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 08/24] gnu: darkhttpd: Update to 1.16. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 09/24] gnu: xlsxio: Update to 0.2.35. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 10/24] gnu: pypy: Update to 7.3.17. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 11/24] gnu: indent: Remove uneeded arguments Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 12/24] gnu: indent: Add patch for CVE-2024-0911. [security fixes] Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 13/24] gnu: squashfs-tools: Update to 4.6.1. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 14/24] gnu: shapelib: Update to 1.6.1. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 15/24] gnu: libzapojit: Update to 0.0.3-1.99d49ba. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 16/24] gnu: gifsicle: Update to 1.95. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 17/24] gnu: sendmail: Update to 8.18.1. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 18/24] gnu: openvpn: Update to 2.6.12. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 19/24] gnu: youtube-dl: Deprecate package Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 20/24] gnu: liblouis: Update to 3.31.0. [security fixes] Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 21/24] gnu: unicorn: Update to 2.1.1. " Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 22/24] gnu: Add sexpp Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 23/24] gnu: rnp: Update to 0.17.1. [security fixes] Nicolas Graves via Guix-patches via
2024-10-26 22:42   ` [bug#74035] [PATCH 24/24] gnu: cjson: Update to 1.7.18. " Nicolas Graves via Guix-patches via
2024-11-03 16:01 ` [bug#74035] [PATCH v2 01/26] gnu: libyang: Update to 3.4.2. " Nicolas Graves via Guix-patches via
2024-11-03 16:01   ` [bug#74035] [PATCH v2 02/26] gnu: python-django-4.2: Update to 4.2.16. " Nicolas Graves via Guix-patches via
2024-11-04 16:08     ` Zheng Junjie
2024-11-03 16:01   ` [bug#74035] [PATCH v2 03/26] gnu: maradns: Update to 3.5.0036. " Nicolas Graves via Guix-patches via
2024-11-04 16:09     ` Zheng Junjie
2024-11-03 16:01   ` [bug#74035] [PATCH v2 04/26] gnu: maradns: Improve style Nicolas Graves via Guix-patches via
2024-11-04 16:09     ` Zheng Junjie
2024-11-03 16:02   ` [bug#74035] [PATCH v2 05/26] gnu: libmobi: Update to 0.12. [security fixes] Nicolas Graves via Guix-patches via
2024-11-04 11:57     ` Zheng Junjie
2024-11-03 16:02   ` [bug#74035] [PATCH v2 06/26] gnu: bart: Update to 0.9.00. " Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 07/26] gnu: wireshark: Update to 4.4.1. " Nicolas Graves via Guix-patches via
2024-11-04  9:38     ` Z572
2024-11-03 16:02   ` [bug#74035] [PATCH v2 08/26] gnu: pam-u2f: Update to 1.3.0. " Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 09/26] gnu: darkhttpd: Update to 1.16. " Nicolas Graves via Guix-patches via
2024-11-04  9:40     ` Z572
2024-11-03 16:02   ` [bug#74035] [PATCH v2 10/26] gnu: xlsxio: Update to 0.2.35. " Nicolas Graves via Guix-patches via
2024-11-04 16:12     ` Zheng Junjie
2024-11-03 16:02   ` [bug#74035] [PATCH v2 11/26] gnu: pypy: Update to 7.3.17. " Nicolas Graves via Guix-patches via
2024-11-04  9:39     ` Z572
2024-11-03 16:02   ` [bug#74035] [PATCH v2 12/26] gnu: indent: Remove uneeded arguments Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 13/26] gnu: indent: Add patch for CVE-2024-0911. [security fixes] Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 14/26] gnu: squashfs-tools: Update to 4.6.1. " Nicolas Graves via Guix-patches via
2024-11-04 11:59     ` Zheng Junjie
2024-11-03 16:02   ` [bug#74035] [PATCH v2 15/26] gnu: shapelib: Update to 1.6.1. " Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 16/26] gnu: libzapojit: Update to 0.0.3-1.99d49ba. " Nicolas Graves via Guix-patches via
2024-11-04 16:06     ` Zheng Junjie
2024-11-03 16:02   ` [bug#74035] [PATCH v2 17/26] gnu: gifsicle: Update to 1.95. " Nicolas Graves via Guix-patches via
2024-11-04 11:58     ` Zheng Junjie
2024-11-03 16:02   ` [bug#74035] [PATCH v2 18/26] gnu: sendmail: Update to 8.18.1. " Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 19/26] gnu: openvpn: Update to 2.6.12. " Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 20/26] gnu: liblouis: Update to 3.31.0. " Nicolas Graves via Guix-patches via
2024-11-04 11:58     ` Zheng Junjie
2024-11-06 16:09       ` Ludovic Courtès
2024-11-07 11:21         ` Z572
2024-11-03 16:02   ` [bug#74035] [PATCH v2 21/26] gnu: youtube-dl: Deprecate package Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 22/26] gnu: unicorn: Update to 2.1.1. [security fixes] Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 23/26] gnu: Add sexpp Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 24/26] gnu: rnp: Update to 0.17.1. [security fixes] Nicolas Graves via Guix-patches via
2024-11-03 16:02   ` [bug#74035] [PATCH v2 25/26] gnu: cjson: Update to 1.7.18. " Nicolas Graves via Guix-patches via
2024-11-04  9:39     ` Z572
2024-11-03 16:02   ` [bug#74035] [PATCH v2 26/26] gnu: snapcast: Update to 0.29.0. " Nicolas Graves via Guix-patches via
2024-11-04 16:08   ` [bug#74035] [PATCH v2 01/26] gnu: libyang: Update to 3.4.2. " Zheng Junjie
2024-11-05 23:10 ` [bug#74035] [PATCH v3 0/8] [security] fixes for near-leaf packages Nicolas Graves via Guix-patches via
2024-11-05 23:10   ` Nicolas Graves via Guix-patches via [this message]
2024-11-05 23:10   ` [bug#74035] [PATCH v3 2/8] gnu: pam-u2f: Update to 1.3.0. [security fixes] Nicolas Graves via Guix-patches via
2024-11-05 23:10   ` [bug#74035] [PATCH v3 3/8] gnu: sendmail: Update to 8.18.1. " Nicolas Graves via Guix-patches via
2024-11-05 23:13 ` [bug#74035] [PATCH v4 1/8] gnu: bart: Update to 0.9.00. " Nicolas Graves via Guix-patches via
2024-11-11 11:47   ` Maxim Cournoyer
2024-11-11 15:23     ` Nicolas Graves via Guix-patches via
2024-11-05 23:13 ` Nicolas Graves via Guix-patches via
2024-11-05 23:13   ` [bug#74035] [PATCH v4 2/8] gnu: pam-u2f: Update to 1.3.0. " Nicolas Graves via Guix-patches via
2024-11-05 23:13   ` [bug#74035] [PATCH v4 3/8] gnu: sendmail: Update to 8.18.1. " Nicolas Graves via Guix-patches via
2024-11-05 23:13   ` [bug#74035] [PATCH v4 4/8] gnu: openvpn: Update to 2.6.12. " Nicolas Graves via Guix-patches via
2024-11-05 23:13   ` [bug#74035] [PATCH v4 5/8] gnu: youtube-dl: Deprecate package Nicolas Graves via Guix-patches via
2024-11-11 11:48     ` Maxim Cournoyer
2024-11-11 15:22       ` Nicolas Graves via Guix-patches via
2024-11-05 23:13   ` [bug#74035] [PATCH v4 6/8] gnu: unicorn: Update to 2.1.1. [security fixes] Nicolas Graves via Guix-patches via
2024-11-05 23:13   ` [bug#74035] [PATCH v4 7/8] gnu: Add sexpp Nicolas Graves via Guix-patches via
2024-11-05 23:13   ` [bug#74035] [PATCH v4 8/8] gnu: rnp: Update to 0.17.1. [security fixes] Nicolas Graves via Guix-patches via
2024-11-11 13:14     ` Maxim Cournoyer
2024-11-11 15:23       ` Nicolas Graves via Guix-patches via
2024-11-12 11:54         ` bug#74035: " Maxim Cournoyer
2024-11-12 14:12     ` [bug#74035] " Maxim Cournoyer

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