[bug#73070] [PATCH 0/3] Fix python development environment

[bug#73070] [PATCH 0/3] Fix python development environment

[Nicolas Graves via Guix-patches via]

The python developping package twine was severely outdated and didn't
work with pypi at all. This update fixes it.

Nicolas Graves (3):
  gnu: python-readme-renderer: Update to 35.0.
  gnu: python-pkginfo: Update to 1.10.0.
  gnu: python-twine: Update to 5.1.1.

 gnu/packages/python-xyz.scm | 50 +++++++++++++++++--------------------
 1 file changed, 23 insertions(+), 27 deletions(-)

-- 
2.45.2

[bug#73070] [PATCH 1/3] gnu: python-pkginfo: Update to 1.10.0.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-pkginfo): Update to 1.10.0.
  [native-inputs]: Add python-wheel.

Change-Id: I682773a5a5c36c9a2ffd9ce8e96048c08a7a174e
---
 gnu/packages/python-xyz.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f28054a489..c391f1d033 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -25687,16 +25687,16 @@ (define-public python-tqdm
 (define-public python-pkginfo
   (package
     (name "python-pkginfo")
-    (version "1.9.6")
+    (version "1.10.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pkginfo" version))
        (sha256
-        (base32 "0inh57664sx2vlbd3913dsc9nz21ysb9vk591qpkg90qhxp8kmcg"))))
+        (base32 "15v2mycr7m4ld5wp1sl9flqjjv8zdgc5rkgfz1wxn44d74skixsx"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-wheel))
     (home-page "https://code.launchpad.net/~tseaver/pkginfo/trunk")
     (synopsis "Query metadatdata from sdists, bdists, and installed packages")
     (description
-- 
2.45.2

[bug#73070] [PATCH 2/3] gnu: python-twine: Update to 5.1.1.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-twine): Update to 5.1.1.
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:test-flags>: Disable failing tests.
  [native-inputs]: Add python-pretend, python-pytest, python-pytest-socket.
  [propagated-inputs]: Remove python-tqdm, python-packaging. Add
  python-imporlib-metadata, python-keyring, python-rfc3986,
  python-rich and python-urllib3.

Change-Id: I55dbcd646dec60cfe8ec226aed0cf3f8c59e2eeb
---
 gnu/packages/python-xyz.scm | 24 ++++++++++++++++++------
 1 file changed, 18 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c391f1d033..4e2bc4fb02 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -25710,21 +25710,33 @@ (define-public python-pkginfo
 (define-public python-twine
   (package
     (name "python-twine")
-    (version "1.15.0")
+    (version "5.1.1")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "twine" version))
         (sha256
-         (base32 "11rpd653zcgzkq3sgwkzs3mpxl3r5rij59745ni84ikv8smjmlm3"))))
-    (build-system python-build-system)
+         (base32 "1nr24gd5gm22b0jzb5qmw4swh8bshixmqm0kv4s38ay0758q584s"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list #:test-flags  ;; Disable failing tests.
+           #~(list "-k" (string-append
+                         "not test_pkginfo_returns_no_metadata"
+                         " and not test_fails_rst_no_content"))))
+    (native-inputs
+     (list python-pretend
+           python-pytest
+           python-pytest-socket))
     (propagated-inputs
-     (list python-tqdm
-           python-packaging
+     (list python-importlib-metadata
+           python-keyring
            python-pkginfo
            python-readme-renderer
            python-requests
-           python-requests-toolbelt))
+           python-requests-toolbelt
+           python-rfc3986
+           python-rich
+           python-urllib3))
     (home-page "https://github.com/pypa/twine")
     (synopsis "Collection of utilities for interacting with PyPI")
     (description
-- 
2.45.2

[bug#73070] [PATCH 3/3] gnu: python-altair: Update to 5.3.0.

[Nicolas Graves via Guix-patches via]

* gnu/packages/statistics.scm (python-altair): Update to 5.3.0.
  [arguments]<#:test-flags>: Add failing tests, reorganize.

Change-Id: I695e63e5395f40997ab59706240b8b059778b0ad
---
 gnu/packages/statistics.scm | 29 +++++++++++++++++++++--------
 1 file changed, 21 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index af64cbd99d..bca7b763a1 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -21,6 +21,7 @@
 ;;; Copyright © 2023 Felix Gruber <felgru@posteo.net>
 ;;; Copyright © 2023 Troy Figiel <troy@troyfigiel.com>
 ;;; Copyright © 2024 Vinicius Monego <monego@posteo.net>
+;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -2113,7 +2114,7 @@ (define-public python-vega-datasets
 (define-public python-altair
   (package
     (name "python-altair")
-    (version "5.0.1")
+    (version "5.3.0")
     (source (origin
               (method git-fetch)        ; no tests in PyPI
               (uri (git-reference
@@ -2122,15 +2123,27 @@ (define-public python-altair
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1r74v5n51br9pjhxdzrr62cdgnwkapci93aifnl8dqmfpizfpd7d"))))
+                "1lx3pkphi36pljns6jjxhyn9fbrana8f1y6gcg4yca48nvwlfssl"))))
     (build-system pyproject-build-system)
     (arguments
-     ;; First two open an external connection.
-     ;; Last introduces a circular dependency on altair-viewer.
-     (list #:test-flags #~(list "-k" (string-append
-                                      "not test_from_and_to_json_roundtrip"
-                                      " and not test_render_examples_to_chart"
-                                      " and not test_save_html"))))
+     (list #:test-flags
+           ;; XXX: This test file requires hard to package python-anywidgets.
+           #~(list "--ignore=tests/test_jupyter_chart.py"
+                   "-k" (string-join
+                         (list
+                          ;; these tests open an external connection.
+                          "not test_from_and_to_json_roundtrip"
+                          "test_render_examples_to_chart"
+                          ;; introduces a circular dependency on altair-viewer.
+                          "not test_save_html"
+                          ;; these tests require the vl-convert vega compiler
+                          "test_vegalite_compiler"
+                          "test_to_dict_with_format_vega"
+                          "test_to_json_with_format_vega"
+                          "test_to_url"
+                          "test_renderer_with_none_embed_options"
+                          "test_jupyter_renderer_mimetype")
+                         " and not "))))
     (propagated-inputs (list python-jinja2
                              python-jsonschema
                              python-numpy
-- 
2.45.2