[bug#70735] [PATCH 000/714] python native-inputs

[bug#70735] [PATCH 000/714] python native-inputs

[Nicolas Graves via Guix-patches via]

How did I proceed ?

1) Identify packages we often don't need as native-inputs + Patches 70570.
2) Systematically remove these packages when they are in native-inputs.
3) Iterate : try to rebuild needed packages, and fixes along the way (these can be updates, packages rewrites, inputs additions...). Back up from the native-input removal when it's not trivial, except for some specific cases (python-dateutil) or sometimes when the package was updated on master.
4) Stop when everything rebuilds properly, except for some specific cases.

   The packages that need rebuilding are identified from :
   guix graph --type=reverse-package -M 1 python-codecov python-coverage python-black python-isort python-pycodestyle python-pep8 python-pyflakes python-flake8 python-pylint python-mypy python-coveralls python-twine python-pytest-isort python-pytest-flake8 python-pytest-cov python-pytest-black python-pytest-pep8 python-pytest-mypy pre-commit | grep label | cut -d\" -f4 | cut -d@ -f1 | sort | uniq

   Some are removed from this list where the package was propagated rather than native, or when the package is left unchanged (e.g. open-adventure), or for those specific cases :
   - "chirp"  ; needs to rebuild webkitgtk, no thanks
   - "cpplint"  ; has been updated on master + requires pytest-runner==5.6
   - "python-modin"  ; this is broken by pandas upgrade, will fix this indenpendently
   - "python-libcst"  ; broken upstream but unchanged
   - "python-schema-salad"  ; broken upstream but unchanged
   - "python-dolfin-adjoint"  ; timeout, but probably works.
   - "reprotest"  ; needs to rebuild the whole openjdk, no thanks.

This patch series is built upon python-team's branch, with Vinicius' patch series 69980 and my patch series 40416 and 70570 on top. For said packages to build properly, we also need the commit 789286ebd91dac2f85ffc4aa65612f011a8bebd3 from Ricardo (python-zarr update), so it's probably good to cherry pick it in the branch first (or rebase, but that will require more work).

Now, what about results in package node graph reduction?

Here's a summary of number of packages under guix refresh -l :

| package              | master | python-team+patch series |
|----------------------+--------+--------------------------|
| python-codecov       |      6 |                        2 |
| python-coverage      |   2341 |                      445 |
| python-black         |    326 |                       34 |
| python-isort         |    268 |                       10 |
| python-pycodestyle   |    386 |                      160 |
| python-pep8          |    217 |                      321 |
| python-pyflakes      |    386 |                      166 |
| python-flake8        |    371 |                      151 |
| python-pylint        |    229 |                        6 |
| python-mypy          |    341 |                      268 |
| python-coveralls     |     23 |                        1 |
| python-twine         |     26 |                        1 |
| python-pytest-isort  |    174 |                        1 |
| python-pytest-flake8 |    296 |                        7 |
| python-pytest-cov    |   2293 |                      272 |
| python-pytest-black  |    272 |                        6 |
| python-pytest-pep8   |     31 |                      151 |
| python-pytest-mypy   |    274 |                        1 |
| pre-commit           |    123 |                        1 |

This means e.g. that an update of python-pylint will trigger 6 packages rebuilds rather than 229. Keep in mind that master isn't yet merged in python-team, so it's normal that some figures might appear higher in the second column (but will diminish once master is merged anyway).

Nicolas Graves (714):
  gnu: python-transient: Remove python-black native-input.
  gnu: python-ovh: Remove python-black native-input.
  gnu: python-funsor: Remove python-black native-input.
  gnu: python-imbalanced-learn: Remove python-black native-input.
  gnu: python-hyperopt: Remove python-black native-input.
  gnu: python-captum: Remove python-black native-input.
  gnu: python-pyro-ppl: Remove python-black native-input.
  gnu: python-trezor: Remove python-black native-input.
  gnu: python-openai: Remove python-black native-input.
  gnu: python-starsessions-for-pytorch-lightning: Remove python-black.
  gnu: python-graphtools: Remove python-black native-input.
  gnu: python-jupytext: Improve package style.
  gnu: python-pydantic-cli: Remove python-black native-input.
  gnu: python-imageio: Remove python-black native-input.
  gnu: python-isort: Improve package style.
  gnu: python-imageio: Remove python-black native-input.
  gnu: python-minikanren: Remove python-black native-input.
  gnu: python-eliot: Remove python-black native-input.
  gnu: python-update-checker: Remove python-black native-input.
  gnu: python-doubletdetection: Remove python-black native-input.
  gnu: python-liana-py: Remove python-black native-input.
  gnu: scvelo: Remove python-black native-input.
  gnu: python-black: Improve package style.
  gnu: calibre: Remove python-flake8 native-input.
  gnu: mdpo: Remove python-flake8 native-input.
  gnu: python-apprise: Remove python-flake8 native-input.
  gnu: python-colorful: Remove python-flake8 native-input.
  gnu: python-pymd4c: Remove python-flake8 native-input.
  gnu: python-pyls-black: Remove python-flake8 native-input.
  gnu: python-pypugjs: Remove python-flake8 native-input.
  gnu: python-docx: Remove python-flake8 native-input.
  gnu: python-importlib-resources: Remove python-flake8 native-input.
  gnu: python-jaraco-test: Remove python-flake8 native-input.
  gnu: python-seaborn: Remove python-flake8 native-input.
  gnu: python-progressbar2: Remove python-flake8 native-input.
  gnu: python-codespell: Remove python-flake8 native-input.
  gnu: python-inflect: Remove python-flake8 native-input.
  gnu: python-argcomplete: Remove python-mypy native-input.
  gnu: python-diff-cover: Remove python-flake8 native-input.
  gnu: python-validators: Remove python-flake8 native-input.
  gnu: python-marshmallow: Remove python-flake8 native-input.
  gnu: python-marshmallow-jsonapi: Remove python-flake8 native-input.
  gnu: python-crds: Remove python-flake8 native-input.
  gnu: python-doubletdetection: Remove python-flake8 native-input.
  gnu: python-biom-format: Remove python-flake8 native-input.
  gnu: scvelo: Remove python-flake8 native-input.
  gnu: python-docker-pycreds: Remove python-flake8 native-input.
  gnu: python-scikit-rf: Remove python-flake8 native-input.
  gnu: python-mt-940: Remove python-flake8 native-input.
  gnu: python-geopy: Remove python-flake8 native-input.
  gnu: python-pygsp: Remove python-flake8 native-input.
  gnu: python-uqbar: Remove python-flake8 native-input.
  gnu: python-funsor: Remove python-flake8 native-input.
  gnu: python-imbalanced-learn: Remove python-flake8 native-input.
  gnu: python-captum: Remove python-flake8 native-input.
  gnu: python-pyro-api: Remove python-flake8 native-input.
  gnu: python-pyro-ppl: Remove python-flake8 native-input.
  gnu: python-linear-operator: Remove python-flake8 native-input.
  gnu: python-gpytorch: Remove python-flake8 native-input.
  gnu: python-mutagen: Remove python-flake8 native-input.
  gnu: python-pure-protobuf: Remove python-flake8 native-input.
  gnu: python-ovh: Remove python-flake8 native-input.
  gnu: python-furl: Remove python-flake8 native-input.
  gnu: python-httplib2: Remove python-flake8 native-input.
  gnu: python-http-ece: Remove python-flake8 native-input.
  gnu: python-woob: Remove python-flake8 native-input.
  gnu: python-starsessions-for-pytorch-lightning: Remove python-flake8
    native-input.
  gnu: python-apispec: Remove python-flake8 native-input.
  gnu: python-apispec-webframeworks: Remove python-flake8 native-input.
  gnu: python-flasgger: Remove python-flake8 native-input.
  gnu: python-yq: Remove python-flake8 native-input.
  gnu: python-update-checker: Remove python-flake8 native-input.
  gnu: python-eliot: Remove python-flake8 native-input.
  gnu: python-dateparser: Remove python-flake8 native-input.
  gnu: python-versioneer: Remove python-flake8 native-input.
  gnu: python-jinja2-cli: Remove python-flake8 native-input.
  gnu: nikola: Remove python-flake8 native-input.
  gnu: python-verspec: Remove python-flake8 native-input.
  gnu: python-mike: Remove python-flake8 native-input.
  gnu: python-arpeggio: Remove python-flake8 native-input.
  gnu: python-dolfin-adjoint: Remove python-flake8 native-input.
  gnu: python-statsmodels: Remove python-flake8 native-input.
  gnu: python-panflute: Remove python-flake8 native-input.
  gnu: sshuttle: Remove python-flake8 native-input.
  gnu: qtile: Remove python-flake8 native-input.
  gnu: python-http-ece: Update to 1.2.0.
  gnu: python-androguard: Remove python-coverage native-input.
  gnu: python-astropy: Remove python-coverage native-input.
  gnu: python-poliastro: Remove python-coverage native-input.
  gnu: python-ega-download-client: Remove python-coverage native-input.
  gnu: python-scikit-bio: Remove python-coverage native-input.
  gnu: python-cooler: Remove python-coverage native-input.
  gnu: u-boot-tools: Remove python-coverage native-input.
  gnu: python-pytest-randomly: Remove python-coverage native-input.
  gnu: python-pytest-flakes: Remove python-coverage native-input.
  gnu: python-aiounittest: Remove python-coverage native-input.
  gnu: python-aiosqlite: Remove python-coverage native-input.
  gnu: reprotest: Remove python-coverage native-input.
  gnu: python-django-localflavor: Remove python-coverage native-input.
  gnu: python-django-haystack: Remove python-coverage native-input.
  gnu: python-scikit-rf: Remove python-coverage native-input.
  gnu: python-geopy: Remove python-coverage native-input.
  gnu: gpodder: Remove python-coverage native-input.
  gnu: python-mygpoclient: Remove python-coverage native-input.
  gnu: python-graphtools: Remove python-coverage native-input.
  gnu: python-pygsp: Remove python-coverage native-input.
  gnu: python-jupyter-packaging: Remove python-coverage native-input.
  gnu: python-jupyter-server: Remove python-coverage native-input.
  gnu: onnx: Remove python-coverage native-input.
  gnu: onnx-optimizer: Remove python-coverage native-input.
  gnu: python-lightning-utilities: Remove python-coverage native-input.
  gnu: python-pytorch-lightning: Remove python-coverage native-input.
  gnu: python-torchmetrics: Remove python-coverage native-input.
  gnu: python-gpytorch: Remove python-coverage native-input.
  gnu: python-pylast: Remove python-coverage native-input.
  gnu: python-anaconda-client: Remove python-coverage native-input.
  gnu: conda: Remove python-coverage native-input.
  gnu: python-vcrpy: Remove python-coverage native-input.
  gnu: python-re-assert: Remove python-coverage native-input.
  gnu: python-multivolumefile: Remove python-coverage native-input.
  gnu: python-pybcj: Remove python-coverage native-input.
  gnu: python-bcj-cffi: Remove python-coverage native-input.
  gnu: python-pyppmd: Remove python-coverage native-input.
  gnu: python-ppmd-cffi: Remove python-coverage native-input.
  gnu: python-py7zr: Remove python-coverage native-input.
  gnu: python-ovh: Remove python-coverage native-input.
  gnu: python-flask-misaka: Remove python-coverage native-input.
  gnu: python-openid: Remove python-coverage native-input.
  gnu: python-zope-interface: Remove python-coverage native-input.
  gnu: python-zope-i18nmessageid: Update to 5.1.1.
  gnu: python-zope-hookable: Remove python-coverage native-input.
  gnu: python-url: Remove python-coverage native-input.
  gnu: python-transaction: Remove python-coverage native-input.
  gnu: python-sanic: Remove python-coverage native-input.
  gnu: python-woob: Remove python-coverage native-input.
  gnu: python-flask-combo-jsonapi: Remove python-coverage native-input.
  gnu: python-apprise: Remove python-coverage native-input.
  gnu: python-colorful: Remove python-coverage native-input.
  gnu: python-lunr: Remove python-coverage native-input.
  gnu: python-mdit-py-plugins: Remove python-coverage native-input.
  gnu: python-bidict: Remove python-coverage native-input.
  gnu: python-sh: Remove python-coverage native-input.
  gnu: python-cftime: Remove python-coverage native-input.
  gnu: python-can: Remove python-coverage native-input.
  gnu: python-jsonargparse: Remove python-coverage native-input.
  gnu: python-extension-helpers: Remove python-coverage native-input.
  gnu: python-pyjwt: Remove python-coverage native-input.
  gnu: python-virtualenv-clone: Remove python-coverage native-input.
  gnu: python-pypugjs: Remove python-coverage native-input.
  gnu: python-lsp-server: Remove python-coverage native-input.
  gnu: python-pikepdf: Remove python-coverage native-input.
  gnu: python-cram: Remove python-coverage native-input.
  gnu: python-tasklogger: Remove python-coverage native-input.
  gnu: python-notebook: Remove python-coverage native-input.
  gnu: python-structlog: Remove python-coverage native-input.
  gnu: binwalk: Remove python-coverage native-input.
  gnu: python-argcomplete: Remove python-coverage native-input.
  gnu: python-attrs: Remove python-coverage native-input.
  gnu: python-yq: Remove python-coverage native-input.
  gnu: python-stone: Remove python-coverage native-input.
  gnu: python-identify: Remove python-coverage native-input.
  gnu: python-nodeenv: Remove python-coverage native-input.
  gnu: python-anyio: Remove python-coverage native-input.
  gnu: python-forbiddenfruit: Remove python-coverage native-input.
  gnu: python-watchgod: Remove python-coverage native-input.
  gnu: python-eliot: Remove python-coverage native-input.
  gnu: python-pem: Remove python-coverage native-input.
  gnu: python-scikit-build: Remove python-coverage native-input.
  gnu: python-minikanren: Remove python-coverage native-input.
  gnu: nikola: Remove python-coverage native-input.
  gnu: python-verspec: Remove python-coverage native-input.
  gnu: python-mike: Remove python-coverage native-input.
  gnu: python-arpeggio: Remove python-coverage native-input.
  gnu: python-dolfin-adjoint: Remove python-coverage native-input.
  gnu: python-emcee: Remove python-coverage native-input.
  gnu: python-rpy2: Remove python-coverage native-input.
  gnu: rtv: Remove python-coverage native-input.
  gnu: tuir: Remove python-coverage native-input.
  gnu: python-halo: Remove python-coverage native-input.
  gnu: python-log-symbols: Remove python-coverage native-input.
  gnu: python-spinners: Remove python-coverage native-input.
  gnu: python-panflute: Remove python-coverage native-input.
  gnu: pre-commit: Remove python-coverage native-input.
  gnu: python-httpretty: Remove python-coverage native-input.
  gnu: python-xmltodict: Remove python-coverage native-input.
  gnu: python-affine: Remove python-flake8 native-input.
  gnu: python-cartopy: Remove python-coveralls native-input.
  gnu: python-graphtools: Remove python-coveralls native-input.
  gnu: python-pygsp: Remove python-coveralls native-input.
  gnu: python-multivolumefile: Remove python-coveralls native-input.
  gnu: python-py7zr: Remove python-coveralls native-input.
  gnu: python-trimesh: Remove python-coveralls native-input.
  gnu: python-flask-combo-jsonapi: Remove python-coveralls native-input.
  gnu: python-affine: Remove python-coveralls native-input.
  gnu: python-cftime: Remove python-coveralls native-input.
  gnu: python-ddlparse: Remove python-coveralls native-input.
  gnu: python-tasklogger: Remove python-coveralls native-input.
  gnu: python-minikanren: Remove python-coveralls native-input.
  gnu: python-arpeggio: Remove python-coveralls native-input.
  gnu: tgcli: Remove python-coveralls native-input.
  gnu: rtv: Remove python-coveralls native-input.
  gnu: tuir: Remove python-coveralls native-input.
  gnu: python-scipy: Remove python-pycodestyle native-input.
  gnu: python-jsonargparse: Remove python-pycodestyle native-input.
  gnu: python-lsp-server: Remove python-pycodestyle native-input.
  gnu: python-orderedmultidict: Remove python-pycodestyle native-input.
  gnu: python-progressbar2: Remove python-pycodestyle native-input.
  gnu: python-stem: Remove python-pycodestyle native-input.
  gnu: python-versioneer: Remove python-pycodestyle native-input.
  gnu: python-versioneer: Remove python-pyflakes native-input.
  gnu: python-re-assert: Remove python-covdefaults native-input.
  gnu: python-can: Remove python-codecov native-input.
  gnu: python-androguard: Remove python-codecov native-input.
  gnu: python-wiimatch: Remove python-codecov native-input.
  gnu: python-ddlparse: Remove python-codecov native-input.
  gnu: python-poliastro: Remove python-mypy native-input.
  gnu: python-psycopg: Remove python-mypy native-input.
  gnu: uranium: Remove python-mypy native-input.
  gnu: cura: Remove python-mypy native-input.
  gnu: python-uqbar: Remove python-mypy native-input.
  gnu: python-imbalanced-learn: Remove python-mypy native-input.
  gnu: python-captum: Remove python-mypy native-input.
  gnu: python-torchmetrics: Remove python-mypy native-input.
  gnu: python-pyro-ppl: Remove python-mypy native-input.
  gnu: python-nptyping: Remove python-mypy native-input.
  gnu: python-scipy: Remove python-mypy native-input.
  gnu: python-huggingface-hub: Remove python-mypy native-input.
  gnu: python-asgiref: Remove python-mypy native-input.
  gnu: python-starsessions-for-pytorch-lightning: Remove python-mypy
    native-input.
  gnu: python-fastapi: Remove python-mypy native-input.
  gnu: python-pyls-black: Remove python-mypy native-input.
  gnu: kalamine: Remove python-mypy native-input.
  gnu: python-pydantic-cli: Remove python-mypy native-input.
  gnu: python-immutables: Remove python-mypy native-input.
  gnu: python-duckdb: Remove python-mypy native-input.
  gnu: python-marshmallow: Remove python-mypy native-input.
  gnu: python-apispec: Remove python-mypy native-input.
  gnu: python-typeguard: Remove python-mypy native-input.
  gnu: python-trio-typing: Remove python-mypy native-input.
  gnu: python-verspec: Remove python-mypy native-input.
  gnu: python-catalogue: Remove python-mypy native-input.
  gnu: python-msgspec: Remove python-mypy native-input.
  gnu: python-transient: Remove python-mypy native-input.
  gnu: python-aionotify: Update to 0.3.0.
  gnu: vdirsyncer: Upgrade to pyproject-build-system and enable tests.
  gnu: radicale: Remove python-pytest-cov native-input.
  gnu: vdirsyncer: Remove python-pytest-cov native-input.
  gnu: python-django-contact-form: Remove python-pytest-cov
    native-input.
  gnu: python-django-localflavor: Improve package style.
  gnu: python-docker-pycreds: Improve package style.
  gnu: Add xcffibgen.
  gnu: python-xcffib: Move to (gnu packages xorg).
  gnu: qtile: Update to 0.23.0.
  gnu: qtile: Improve package style.
  gnu: qtile: Remove python-pytest-cov native-input.
  gnu: sshuttle: Upgrade to pyproject-build-system.
  gnu: Add ghc-language-python.
  gnu: python-aiosignal: Remove python-pytest-cov native-input.
  gnu: python-aiostream: Remove python-pytest-cov native-input.
  gnu: python-apiron: Remove python-pytest-cov native-input.
  gnu: python-venusian: Remove python-pytest-cov native-input.
  gnu: python-hupper: Remove python-pytest-cov native-input.
  gnu: python-astroml: Replace python-pytest-cov native-input.
  gnu: python-casa-formats-io: Remove python-pytest-cov native-input.
  gnu: python-cdflib: Remove python-pytest-cov native-input.
  gnu: python-czml3: Remove python-pytest-cov native-input.
  gnu: python-poliastro: Remove python-pytest-cov native-input.
  gnu: python-wiimatch: Remove python-pytest-cov native-input.
  gnu: python-pysox: Remove python-pytest-cov native-input.
  gnu: borgmatic: Remove python-pytest-cov native-input.
  gnu: python-biom-format: Remove python-pytest-cov native-input.
  gnu: python-screed: Remove python-pytest-cov native-input.
  gnu: python-pyfaidx: Remove python-pytest-cov native-input.
  gnu: python-cooler: Remove python-pytest-cov native-input.
  gnu: meson-python: Remove python-pytest-cov native-input.
  gnu: python-pytest-nunit: Remove python-pytest-cov native-input.
  gnu: python-pytest-timeout: Remove python-pytest-cov native-input.
  gnu: python-pytest-enabler: Remove python-pytest-cov native-input.
  gnu: python-pytest-perf: Remove python-pytest-cov native-input.
  gnu: python-pyhamcrest: Remove python-pytest-cov native-input.
  gnu: python-alembic: Remove python-pytest-cov native-input.
  gnu: python-django-extensions: Remove python-pytest-cov native-input.
  gnu: mbed-tools: Remove python-pytest-cov native-input.
  gnu: python-scikit-rf: Fix tests.
  gnu: python-scikit-rf: Remove python-pytest-cov native-input.
  gnu: psautohint: Remove python-pytest-cov native-input.
  gnu: python-fiona: Remove python-pytest-cov native-input.
  gnu: python-cartopy: Remove python-pytest-cov native-input.
  gnu: mdpo: Remove python-pytest-cov native-input.
  gnu: python-graphviz: Remove python-pytest-cov native-input.
  gnu: python-uqbar: Remove python-pytest-cov native-input.
  gnu: python-jupyter-packaging: Remove python-pytest-cov native-input.
  gnu: python-jupyter-server: Remove python-pytest-cov native-input.
  gnu: python-jupyterlite-core: Remove python-pytest-cov native-input.
  gnu: python-ipydatawidgets: Remove python-pytest-cov native-input.
  gnu: python-persim: Remove python-pytest-cov native-input.
  gnu: python-scikit-learn-extra: Remove python-pytest-cov native-input.
  gnu: python-imbalanced-learn: Remove python-pytest-cov native-input.
  gnu: python-keras-applications: Remove python-pytest-cov native-input.
  gnu: python-keras-preprocessing: Remove python-pytest-cov
    native-input.
  gnu: python-keras: Remove python-pytest-cov native-input.
  gnu: python-tensorly: Remove python-pytest-cov native-input.
  gnu: python-pytorch-geometric: Remove python-pytest-cov native-input.
  gnu: python-captum: Remove python-pytest-cov native-input.
  gnu: python-torchmetrics: Remove python-pytest-cov native-input.
  gnu: python-pyro-ppl: Remove python-pytest-cov native-input.
  gnu: python-mastodon-py: Remove python-pytest-cov native-input.
  gnu: conda: Improve package style.
  gnu: conda: Improve package style.
  gnu: python-conda-package-handling: Remove python-pytest-cov
    native-input.
  gnu: pwclient: Remove python-pytest-cov native-input.
  gnu: python-pure-protobuf: Remove python-pytest-cov native-input.
  gnu: python-testfixtures: Remove python-pytest-cov native-input.
  gnu: python-vcrpy: Remove python-pytest-cov native-input.
  gnu: python-pytest-filter-subpackage: Remove python-pytest-cov
    native-input.
  gnu: python-pytest-trio: Remove python-pytest-cov native-input.
  gnu: python-atpublic: Remove python-pytest-cov native-input.
  gnu: python-sybil: Remove python-pytest-cov native-input.
  gnu: python-vulture: Remove python-pytest-cov native-input.
  gnu: python-multivolumefile: Remove python-pytest-cov native-input.
  gnu: python-pybcj: Remove python-pytest-cov native-input.
  gnu: python-bcj-cffi: Remove python-pytest-cov native-input.
  gnu: python-pyppmd: Remove python-pytest-cov native-input.
  gnu: python-ppmd-cffi: Remove python-pytest-cov native-input.
  gnu: python-py7zr: Remove python-pytest-cov native-input.
  gnu: python-certauth: Remove python-pytest-cov native-input.
  gnu: python-trustme: Remove python-pytest-cov native-input.
  gnu: python-scipy: Remove python-pytest-cov native-input.
  gnu: python-trimesh: Remove python-pytest-cov native-input.
  gnu: python-pandarallel: Remove python-pytest-cov native-input.
  gnu: python-pyts: Remove python-pytest-cov native-input.
  gnu: python-upsetplot: Remove python-pytest-cov native-input.
  gnu: python-pingouin: Remove python-pytest-cov native-input.
  gnu: python-opt-einsum: Remove python-pytest-cov native-input.
  gnu: python-salib: Remove python-pytest-cov native-input.
  gnu: python-huggingface-hub: Remove python-pytest-cov native-input.
  gnu: python-portend: Remove python-pytest-cov native-input.
  gnu: python-ovh: Remove python-pytest-cov native-input.
  gnu: python-cbor2: Remove python-pytest-cov native-input.
  gnu: python-httplib2: Remove python-pytest-cov native-input.
  gnu: python-cheroot: Remove python-pytest-cov native-input.
  gnu: parfive: Remove python-pytest-cov native-input.
  gnu: python-jose: Remove python-pytest-cov native-input.
  gnu: python-pyscss: Remove python-pytest-cov native-input.
  gnu: python-mechanicalsoup: Remove python-pytest-cov native-input.
  gnu: python-priority: Remove python-pytest-cov native-input.
  gnu: hypercorn: Remove python-pytest-cov native-input.
  gnu: python-aioftp: Remove python-pytest-cov native-input.
  gnu: python-oauthlib: Remove python-pytest-cov native-input.
  gnu: python-tinycss: Remove python-pytest-cov native-input.
  gnu: python-tinycss2: Remove python-pytest-cov native-input.
  gnu: python-cssselect2: Remove python-pytest-cov native-input.
  gnu: gunicorn: Improve package style.
  gnu: gunicorn: Remove python-pytest-cov native-input.
  gnu: python-httpcore: Remove python-pytest-cov native-input.
  gnu: python-wsgiprox: Remove python-pytest-cov native-input.
  gnu: python-warcio: Remove python-pytest-cov native-input.
  gnu: python-cloud-init: Remove python-pytest-cov native-input.
  gnu: python-siosocks: Remove python-pytest-cov native-input.
  gnu: python-zeep: Remove python-pytest-cov native-input.
  gnu: python-apprise: Remove python-pytest-cov native-input.
  gnu: python-janus: Remove python-pytest-cov native-input.
  gnu: python-logbook: Remove python-pytest-cov native-input.
  gnu: python-affine: Remove python-pytest-cov native-input.
  gnu: python-mdit-py-plugins: Remove python-pytest-cov native-input.
  gnu: python-pint: Remove python-pytest-cov native-input.
  gnu: python-rasterio: Remove python-pytest-cov native-input.
  gnu: python-bidict: Remove python-pytest-cov native-input.
  gnu: python-cftime: Remove python-pytest-cov native-input.
  gnu: python-can: Remove python-pytest-cov native-input.
  gnu: dosage: Remove python-pytest-cov native-input.
  gnu: python-portalocker: Remove python-pytest-cov native-input.
  gnu: python-extension-helpers: Remove python-pytest-cov native-input.
  gnu: python-mizani: Remove python-pytest-cov native-input.
  gnu: python-cligj: Remove python-pytest-cov native-input.
  gnu: python-ddlparse: Remove python-pytest-cov native-input.
  gnu: python-robotframework-pythonlibcore: Remove python-pytest-cov
    native-input.
  gnu: python-lsp-server: Remove python-pytest-cov native-input.
  gnu: python-sparse: Remove python-pytest-cov native-input.
  gnu: python-numpydoc: Remove python-pytest-cov native-input.
  gnu: python-multidict: Remove python-pytest-cov native-input.
  gnu: python-pikepdf: Remove python-pytest-cov native-input.
  gnu: python-imageio: Remove python-pytest-cov native-input.
  gnu: python-manimpango: Remove python-pytest-cov native-input.
  gnu: python-importlib-resources: Remove python-pytest-cov
    native-input.
  gnu: python-jaraco-classes: Remove python-pytest-cov native-input.
  gnu: python-jaraco-collections: Remove python-pytest-cov native-input.
  gnu: python-jaraco-context: Remove python-pytest-cov native-input.
  gnu: python-jaraco-functools: Remove python-pytest-cov native-input.
  gnu: python-jaraco-test: Remove python-pytest-cov native-input.
  gnu: python-jaraco-text: Remove python-pytest-cov native-input.
  gnu: python-ipyparallel: Remove python-pytest-cov native-input.
  gnu: python-pubmed-parser: Remove python-pytest-cov native-input.
  gnu: python-three-merge: Remove python-pytest-cov native-input.
  gnu: python-seaborn: Remove python-pytest-cov native-input.
  gnu: python-sentry-sdk: Remove python-pytest-cov native-input.
  gnu: python-sniffio: Remove python-pytest-cov native-input.
  gnu: python-get-version: Remove python-pytest-cov native-input.
  gnu: python-legacy-api-wrap: Remove python-pytest-cov native-input.
  gnu: python-path: Remove python-pytest-cov native-input.
  gnu: python-pip-run: Remove python-pytest-cov native-input.
  gnu: python-debugpy: Remove python-pytest-cov native-input.
  gnu: python-notebook: Remove python-pytest-cov native-input.
  gnu: python-ipywidgets: Remove python-pytest-cov native-input.
  gnu: python-qstylizer: Remove python-pytest-cov native-input.
  gnu: python-cookiecutter: Remove python-pytest-cov native-input.
  gnu: python-pyqtgraph: Remove python-pytest-cov native-input.
  gnu: python-codespell: Remove python-pytest-cov native-input.
  gnu: python-inflect: Remove python-pytest-cov native-input.
  gnu: python-lazy-loader: Remove python-pytest-cov native-input.
  gnu: python-pymemcache: Remove python-pytest-cov native-input.
  gnu: python-natsort: Remove python-pytest-cov native-input.
  gnu: python-mwclient: Remove python-pytest-cov native-input.
  gnu: python-flasgger: Remove python-pytest-cov native-input.
  gnu: python-tempora: Remove python-pytest-cov native-input.
  gnu: python-outcome: Remove python-pytest-cov native-input.
  gnu: python-trio: Remove python-pytest-cov native-input.
  gnu: python-apscheduler: Remove python-pytest-cov native-input.
  gnu: python-iocapture: Remove python-pytest-cov native-input.
  gnu: python-argh: Remove python-pytest-cov native-input.
  gnu: python-flit: Remove python-pytest-cov native-input.
  gnu: python-watchdog: Remove python-pytest-cov native-input.
  gnu: python-watchgod: Remove python-pytest-cov native-input.
  gnu: python-cmd2: Remove python-pytest-cov native-input.
  gnu: python-inform: Remove python-pytest-cov native-input.
  gnu: python-qtsass: Remove python-pytest-cov native-input.
  gnu: python-scikit-build: Remove python-pytest-cov native-input.
  gnu: python-pyan3: Remove python-pytest-cov native-input.
  gnu: python-minikanren: Remove python-pytest-cov native-input.
  gnu: python-tablib: Remove python-pytest-cov native-input.
  gnu: dynaconf: Improve package style.
  gnu: dynaconf: Remove python-pytest-cov native-input.
  gnu: nikola: Remove python-pytest-cov native-input.
  gnu: python-ansicolors: Remove python-pytest-cov native-input.
  gnu: python-multipart: Remove python-pytest-cov native-input.
  gnu: python-shtab: Remove python-pytest-cov native-input.
  gnu: python-scooby: Remove python-pytest-cov native-input.
  gnu: python-sphinx-gallery: Remove python-pytest-cov native-input.
  gnu: python-pymc: Remove python-pytest-cov native-input.
  gnu: python-emcee: Remove python-pytest-cov native-input.
  gnu: python-rpy2: Remove python-pytest-cov native-input.
  gnu: todoman: Remove python-pytest-cov native-input.
  gnu: python-panflute: Remove python-pytest-cov native-input.
  gnu: python-tzlocal: Remove python-pytest-cov native-input.
  gnu: python-arrow: Improve package style.
  gnu: python-arrow: Remove python-pytest-cov native-input.
  gnu: sshuttle: Remove python-pytest-cov native-input.
  gnu: python-tibanna: Remove python-pytest-cov native-input.
  gnu: anonip: Remove python-pytest-cov native-input.
  gnu: python-pypujs: Improve package style.
  gnu: zulip-term: Upgrade to pyproject-build-system.
  gnu: zulip-term: Remove python-pytest-cov native-input.
  gnu: python-dateutil: Improve package style.
  gnu: python-pypujs: Remove python-flake8 native-input.
  gnu: jupytext: Fix pre-commit native-input removal.
  gnu: python-dateutil: Remove python-pytest-cov native-input.
  gnu: python-nbval: Improve package style.
  gnu: python-asdf-astropy: Fix build.
  gnu: python-qemu-qmp: Remove python-isort native-input.
  gnu: python-cooler: Remove python-isort native-input.
  gnu: scvelo: Remove python-isort native-input.
  gnu: aerich: Remove python-isort native-input.
  gnu: python-django-taggit: Remove python-isort native-input.
  gnu: python-trezor: Remove python-isort native-input.
  gnu: python-geopy: Remove python-isort native-input.
  gnu: mdpo: Remove python-isort native-input.
  gnu: python-uqbar: Remove python-isort native-input.
  gnu: python-funsor: Remove python-isort native-input.
  gnu: python-pyro-ppl: Remove python-isort native-input.
  gnu: python-hyperkitty: Remove python-isort native-input.
  gnu: postorius: Remove python-isort native-input.
  gnu: python-ovh: Remove python-isort native-input.
  gnu: python-fastapi: Remove python-isort native-input.
  gnu: python-pure-protobuf: Remove python-isort native-input.
  gnu: python-jupytext: Remove python-isort native-input.
  gnu: python-pyls-black: Remove python-isort native-input.
  gnu: python-textdistance: Remove python-isort native-input.
  gnu: python-validators: Remove python-isort native-input.
  gnu: python-sphinx: Remove python-isort native-input.
  gnu: python-sphinx-5: Remove python-isort native-input.
  gnu: python-statsmodels: Remove python-isort native-input.
  gnu: mdpo: Remove python-twine native-input.
  gnu: python-linear-operator: Remove python-twine native-input.
  gnu: python-gpytorch: Remove python-twine native-input.
  gnu: python-testfixtures: Remove python-twine native-input.
  gnu: python-translation-finder: Remove python-twine native-input.
  gnu: python-cftime: Remove python-twine native-input.
  gnu: python-eventlet: Remove python-isort native-input.
  gnu: python-eventlet: Remove python-twine native-input.
  gnu: python-eliot: Remove python-twine native-input.
  gnu: python-arpeggio: Remove python-twine native-input.
  gnu: python-halo: Remove python-twine native-input.
  gnu: python-transient: Remove python-twine native-input.
  gnu: python-pytest-runner: Improve package style.
  gnu: python-mutagen: Add missing native-inputs.
  gnu: python-nptyping: Add python-setuptools native-input.
  gnu: python-aiostream: Add missing native-inputs.
  gnu: python-cbor2: Add missing native-inputs.
  gnu: gunicorn: Update to 21.2.0.
  gnu: gunicorn: Add missing native-inputs.
  gnu: python-black: Add missing native-inputs.
  gnu: python-multidict: Add missing native-inputs.
  gnu: python-mpv-jsonipc: Add missing native-inputs.
  gnu: python-humanize: Add missing native-inputs.
  gnu: python-dateutil: Add missing native-inputs.
  gnu: python-pyan3: Add python-wheel native-input.
  gnu: python-cmd2: Add missing native-inputs.
  gnu: python-tinycss: Improve package style.
  gnu: behave: Move to pyproject-build-system.
  gnu: python-jupyterlab-server: Move to pyproject-build-system.
  gnu: python-pydyf: Remove arguments field.
  gnu: weasyprint: Stop hiding setup.cfg.
  gnu: python-cucumber-tag-expressions: Move to pyproject-build-system.
  gnu: python-keyring: Stop hiding setup.cfg.
  gnu: python-asgi-csrf: Stop hiding setup.cfg.
  gnu: python-asgi-lifespan: Stop hiding setup.cfg.
  gnu: python-openapi-core: Stop hiding setup.cfg.
  gnu: python-flask-login: Move to pyproject-build-system.
  gnu: python-parse-type: Move to pyproject-build-system.
  gnu: python-amqp: Move to pyproject-build-system.
  gnu: python-cattrs: Stop hiding setup.cfg.
  gnu: python-openapi-schema-validator: Stop hiding coverage options.
  gnu: python-openapi-spec-validator: Stop hiding coverage options.
  gnu: python-unidecode: Update to 1.3.8.
  gnu: python-unidecode: Add missing native-inputs.
  gnu: python-cbor: Update home-page.
  gnu: python-sphinx: Ignore failing tests.
  gnu: python-sphinx-autodoc-typehints: Improve package style.
  gnu: python-sphinx-autodoc-typehints: Add missing native-inputs.
  gnu: Add python-sphinx-autodoc-typehints-5.
  gnu: python-uqbar: Improve package style.
  gnu: python-uqbar: Upgrade to python-team branch.
  gnu: python-uqbar: Update to 0.6.9.
  gnu: python-uqbar: Add missing native-inputs.
  gnu: abjad-ext-ipython: Remove uneeded native-inputs.
  gnu: abjad: Update to 3.19.
  gnu: abjad-ext-rmakers: Update to 3.19.
  gnu: abjad-ext-nauert: Update to 3.19.
  gnu: python-pytest-remotedata: Ignore failing test.
  gnu: python-tinycss: Remove unneeded native-input.
  gnu: python-tinycss: Add missing native-inputs.
  gnu: python-isort: Add python-pip native-input.
  gnu: abjad: Add missing native-inputs.
  gnu: abjad-ext-rmakers: Add missing native-inputs.
  gnu: abjad-ext-nauert: Add missing native-inputs.
  gnu: python-tinycss2: Remove python-pytest-isort native-input.
  gnu: python-pytest-toolbox: Improve package style.
  gnu: python-pytest-toolbox: Remove python-pytest-isort native-input.
  gnu: python-pytest-toolbox: Add missing native-inputs.
  gnu: radicale: Remove python-pytest-isort native-input.
  gnu: python-cairosvg: Move to pyproject-build-system.
  gnu: python-cairosvg: Add missing native-inputs.
  gnu: python-sparse: Move to pyproject-build-system.
  gnu: python-numpydoc: Add missing native-inputs.
  gnu: python-immutables: Add missing native-inputs.
  gnu: python-pytest-enabler-bootstrap: Add missing name field.
  gnu: python-docspec-python: Move to pyproject-build-system.
  gnu: python-pytest-enabler: Remove python-pytest-black native-input.
  gnu: python-pytest-perf: Remove python-pytest-black native-input.
  gnu: python-importlib-resources: Remove python-pytest-black
    native-input.
  gnu: python-vcrpy: Remove python-black native-input.
  gnu: python-portend: Remove python-pytest-black native-input.
  gnu: python-xcffib: Add missing native-inputs.
  gnu: python-path: Remove python-pytest-black native-input.
  gnu: python-pip-run: Remove python-pytest-black native-input.
  gnu: python-inflect: Remove python-pytest-black native-input.
  gnu: python-tempora: Remove python-pytest-black native-input.
  gnu: python-jaraco-classes: Move to pyproject-build-system.
  gnu: python-jaraco-classes: Remove python-pytest-black native-input.
  gnu: python-jaraco-classes: Add python-setuptools native-input.
  gnu: python-jaraco-collections: Remove python-pytest-black
    native-input.
  gnu: python-jaraco-context: Move to pyproject-build-system.
  gnu: python-jaraco-context: Remove python-pytest-black native-input.
  gnu: python-jaraco-functools: Move to pyproject-build-system.
  gnu: python-jaraco-functools: Remove python-pytest-black native-input.
  gnu: python-jaraco-packaging: Move to pyproject-build-system.
  gnu: python-jaraco-test: Move to pyproject-build-system.
  gnu: python-jaraco-test: Remove python-pytest-black native-input.
  gnu: python-jaraco-text: Remove python-pytest-black native-input.
  gnu: python-legacy-api-wrap: Remove python-pytest-black native-input.
  gnu: python-isort: Remove python-black native-input.
  gnu: python-matplotlib: Ignore failing tests.
  gnu: ptpython: Remove python-black optional propagated-input.
  gnu: python-jaraco-context-bootstrap: Add missing native-inputs.
  gnu: python-jaraco-functools-bootstrap: Add missing native-inputs.
  gnu: python-pytest-enabler: Remove python-pytest-flake8 native-input.
  gnu: python-pytest-perf: Remove python-pytest-flake8 native-input.
  gnu: radicale: Remove python-pytest-flake8 native-input.
  gnu: python-pytest-csv: Remove python-pytest-flake8 native-input.
  gnu: python-tinycss2: Remove python-pytest-flake8 native-input.
  gnu: python-mechanicalsoup: Remove python-pytest-flake8 native-input.
  gnu: python-mechanicalsoup: Add missing native-inputs.
  gnu: python-cram: Add missing native-inputs.
  gnu: python-nbstripout: Move to pyproject-build-system.
  gnu: python-nbstripout: Remove python-pytest-flake8 native-input.
  gnu: python-nbstripout: Add missing native-inputs.
  gnu: python-path: Remove python-pytest-flake8 native-input.
  gnu: python-pip-run: Remove python-pytest-flake8 native-input.
  gnu: python-inflect: Remove python-pytest-flake8 native-input.
  gnu: python-tempora: Remove python-pytest-flake8 native-input.
  gnu: python-cairosvg: Remove python-pytest-flake8 native-input.
  gnu: python-importlib-resources: Remove python-pytest-flake8
    native-input.
  gnu: python-jaraco-classes: Remove python-pytest-flake8 native-input.
  gnu: python-jaraco-context: Remove python-pytest-flake8 native-input.
  gnu: python-jaraco-functools: Remove python-pytest-flake8
    native-input.
  gnu: python-jaraco-packaging: Remove python-pytest-flake8
    native-input.
  gnu: python-jaraco-test: Remove python-pytest-flake8 native-input.
  gnu: python-portend: Remove python-pytest-mypy native-input.
  gnu: python-importlib-resources: Remove python-pytest-mypy
    native-input.
  gnu: python-jaraco-classes: Remove python-pytest-mypy native-input.
  gnu: python-jaraco-collections: Remove python-pytest-mypy
    native-input.
  gnu: python-jaraco-context: Remove python-pytest-mypy native-input.
  gnu: python-jaraco-functools: Remove python-pytest-mypy native-input.
  gnu: python-jaraco-test: Remove python-pytest-mypy native-input.
  gnu: python-jaraco-text: Remove python-pytest-mypy native-input.
  gnu: python-path: Remove python-pytest-mypy native-input.
  gnu: python-pip-run: Remove python-pytest-mypy native-input.
  gnu: python-inflect: Remove python-pytest-mypy native-input.
  gnu: python-tempora: Remove python-pytest-mypy native-input.
  gnu: python-pytest-enabler: Break dependency cycle.
  gnu: python-pydata-sphinx-theme: Move to pyproject-build-system.
  gnu: python-pint: Disable benchmark tests.
  gnu: python-apprise: Improve package style.
  gnu: python-apprise: Add python-setuptools native-input.
  gnu: python-autoflake: Update to 2.3.1.
  gnu: python-django-contact-form: Add missing native-inputs.
  gnu: python-django-localflavor: Add missing native-inputs.
  gnu: python-pytest-perf: Remove python-pytest-mypy native-input.
  gnu: python-ega-download-client: Add missing native-inputs.
  gnu: python-cfgv: Add missing native-inputs.
  gnu: python-halo: Add missing native-inputs.
  gnu: python-lsp-server: Move to pyproject-build-system.
  gnu: python-lsp-server: Add missing native-inputs.
  gnu: python-jupytext: Add missing native-inputs.
  gnu: python-orderedmultidict: Move to pyproject-build-system.
  gnu: python-orderedmultidict: Add missing native-inputs.
  gnu: python-nodeenv: Add missing native-inputs.
  gnu: python-multipart: Add missing native-inputs.
  gnu: python-nbval: Add missing native-inputs.
  gnu: python-nbconvert: Improve package style.
  gnu: python-nbconvert: Add missing native-inputs.
  gnu: python-fenics-dijitso: Add missing native-inputs.
  gnu: python-hupper: Add missing native-inputs.
  gnu: python-pytest-trio: Add missing native-inputs.
  gnu: datasette: Remove python-black native-input.
  gnu: datasette: Add python-pip native-input.
  gnu: python-nbconvert: Ignore failing test.
  gnu: python-nbconvert: Add missing propagated-inputs.
  gnu: python-conda-package-handling: Add missing native-inputs.
  gnu: python-jupyterlab-server: Add python-wheel native-input.
  gnu: python-arrow: Add missing native-inputs.
  gnu: python-notebook: Update to 6.4.13.
  gnu: python-pytest-testmon: Add missing native-inputs.
  gnu: python-notebook: Add python-jupyter-server native-input.
  gnu: python-pyinstrument: Add missing native-inputs.
  gnu: python-pydata-sphinx-theme: Ignore failing tests.
  gnu: python-pydata-sphinx-theme: Add missing native-inputs.
  gnu: python-shtab: Move to pyproject-build-system.
  gnu: conda: Add python-wheel native-input.
  gnu: python-shtab: Add python-setuptools native-input.
  gnu: parfive: Add missing native-inputs.
  gnu: python-aioftp: Add missing native-inputs.
  gnu: python-sanic: Add missing native-inputs.
  gnu: python-ukkonen: Add missing native-inputs.
  gnu: python-identify: Add missing native-inputs.
  gnu: pre-commit: Add missing native-inputs.
  gnu: python-qemu-qmp: Improve package style.
  gnu: python-qemu-qmp: Move to pyproject-build-system.
  gnu: python-transient: Add missing native-inputs.
  gnu: python-flake8-isort: Move to pyproject-build-system.
  gnu: python-xmltodict: Move to pyproject-build-system.
  gnu: python-rich: Update to 13.7.1.
  gnu: python-zarr: Add missing native-inputs.
  gnu: python-typeguard-4: Ignore failing tests.
  gnu: python-rich: Ignore failing tests.
  gnu: python-jupytext: Remove python-black native-input.
  gnu: python-portalocker: Remove python-pytest-mypy native-input.
  gnu: python-funsor: Ignore flaky test.
  gnu: python-linear-operator: Remove python-flake8-print native-input
  gnu: python-linear-operator: Add python-setuptools native-input.
  gnu: python-gpytorch: Add python-setuptools native-input.
  gnu: python-zope-i18nmessageid: Move to pyproject-build-system.
  gnu: python-sparse: Remove python-pytest-black native-input.
  gnu: python-sparse: Add python-setuptools native-input.
  gnu: python-asdf-astropy: Remove python-coverage native-input.
  gnu: cpplint: Remove python-coverage native-input.
  gnu: python-tweakwcs: Remove python-pytest-cov native-input.
  gnu: python-loguru: Remove python-mypy native-input.
  gnu: Add ghc-xcb-types.
  gnu: python-stcal: Remove python-pytest-cov native-input.
  gnu: python-tweakwcs: Remove python-codecov native-input.
  gnu: borgmatic: Move to pyproject-build-system.
  gnu: python-loguru: Remove python-pytest-cov native-input.
  gnu: python-pytest-xdist: Move to pyproject-build-system.
  gnu: cpplint: Remove python-pytest-cov native-input.
  gnu: python-casa-formats-io: Add python-setuptools native-input.
  gnu: python-drms: Add missing native-inputs.
  gnu: python-asdf-coordinates-schemas: Add missing native-inputs.
  gnu: python-asdf-wcs-schemas: Add missing native-inputs.
  gnu: python-spherical-geometry: Add missing native-inputs.
  gnu: python-tweakwcs: Add python-setuptools native-input.
  gnu: python-rad: Add missing native-inputs.
  gnu: python-czml3: Remove python-pytest-mypy native-input.
  gnu: python-poliastro: Remove python-pytest-mypy native-input.
  gnu: python-captum: Add python-setuptools native-input.
  gnu: abjad-ext-ipython: Remove uneeded inputs.
  gnu: python-pydantic-2: Ignore failing tests.
  gnu: tuir: Move to pyproject-build-system.
  gnu: tuir: Add missing native-inputs.
  gnu: python-fenics-dijitso: Move to pyproject-build-system.
  gnu: python-sphinx: Remove python-flake8 input.
  gnu: python-sphinx: Remove python-mypy input.
  gnu: python-sphinx-5: Remove python-flake8 input.
  gnu: python-sphinx-5: Remove python-mypy input.

 gnu/local.mk                                  |    1 -
 gnu/packages/android.scm                      |    6 +-
 gnu/packages/astronomy.scm                    |   61 +-
 gnu/packages/audio.scm                        |    2 +-
 gnu/packages/backup.scm                       |   16 +-
 gnu/packages/bioinformatics.scm               |   35 +-
 gnu/packages/bootloaders.scm                  |   17 +-
 gnu/packages/build-tools.scm                  |    1 -
 gnu/packages/check.scm                        |  136 +--
 gnu/packages/cpp.scm                          |    4 +-
 gnu/packages/databases.scm                    |   34 +-
 gnu/packages/dav.scm                          |   18 +-
 gnu/packages/diffoscope.scm                   |    1 -
 gnu/packages/django.scm                       |   34 +-
 gnu/packages/docker.scm                       |   28 +-
 gnu/packages/ebook.scm                        |    1 -
 gnu/packages/embedded.scm                     |    1 -
 gnu/packages/engineering.scm                  |   13 +-
 gnu/packages/finance.scm                      |    6 +-
 gnu/packages/fontutils.scm                    |    1 -
 gnu/packages/geo.scm                          |    9 +-
 gnu/packages/gettext.scm                      |    4 -
 gnu/packages/gpodder.scm                      |    3 +-
 gnu/packages/graph.scm                        |    4 -
 gnu/packages/graphviz.scm                     |   35 +-
 gnu/packages/haskell-xyz.scm                  |   25 +
 gnu/packages/jupyter.scm                      |   59 +-
 gnu/packages/machine-learning.scm             |   68 +-
 gnu/packages/mail.scm                         |    3 +-
 gnu/packages/mastodon.scm                     |    1 -
 gnu/packages/messaging.scm                    |   25 +-
 gnu/packages/music.scm                        |   87 +-
 gnu/packages/package-management.scm           |  221 ++--
 .../patches/python-uqbar-python3.10.patch     |   23 -
 gnu/packages/patchutils.scm                   |    2 +-
 gnu/packages/pdf.scm                          |    6 +-
 gnu/packages/protobuf.scm                     |    4 +-
 gnu/packages/python-check.scm                 |  156 ++-
 gnu/packages/python-compression.scm           |   21 +-
 gnu/packages/python-crypto.scm                |   29 +-
 gnu/packages/python-science.scm               |   21 +-
 gnu/packages/python-web.scm                   |  338 ++----
 gnu/packages/python-xyz.scm                   | 1034 ++++++-----------
 gnu/packages/serialization.scm                |    5 +-
 gnu/packages/simulation.scm                   |   23 +-
 gnu/packages/sphinx.scm                       |   50 +-
 gnu/packages/statistics.scm                   |   14 +-
 gnu/packages/syndication.scm                  |   27 +-
 gnu/packages/task-management.scm              |    1 -
 gnu/packages/telegram.scm                     |    3 +-
 gnu/packages/terminals.scm                    |    8 +-
 gnu/packages/textutils.scm                    |    3 -
 gnu/packages/time.scm                         |   58 +-
 gnu/packages/version-control.scm              |    3 +-
 gnu/packages/virtualization.scm               |   21 +-
 gnu/packages/vpn.scm                          |   14 +-
 gnu/packages/web.scm                          |    6 +-
 gnu/packages/wm.scm                           |  113 +-
 gnu/packages/xml.scm                          |    7 +-
 gnu/packages/xorg.scm                         |  101 ++
 60 files changed, 1196 insertions(+), 1855 deletions(-)
 delete mode 100644 gnu/packages/patches/python-uqbar-python3.10.patch

-- 
2.41.0

[bug#70735] [PATCH 001/714] gnu: python-transient: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/virtualization.scm (python-transient):
  [native-inputs]: Remove python-black.

Change-Id: Id965a243ebf42ad249e63e9ad6f4fb22e39c3876
---
 gnu/packages/virtualization.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index f366388623..1bfa31b7d3 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -2777,7 +2777,7 @@ (define-public python-transient
            python-requests
            python-toml))
     (native-inputs
-     (list python-black python-mypy python-pyhamcrest python-twine))
+     (list python-mypy python-pyhamcrest python-twine))
     (home-page "https://github.com/ALSchwalm/transient")
     (synopsis "QEMU Wrapper written in Python")
     (description
-- 
2.41.0

[bug#70735] [PATCH 002/714] gnu: python-ovh: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-ovh):
  [native-inputs]: Remove python-black.

Change-Id: I62a0ac9c37a72ab5e7e979001bb347c2c75a8be9
---
 gnu/packages/python-web.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index bd9c50a006..3fccdcdf59 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -974,8 +974,7 @@ (define-public python-ovh
     (build-system pyproject-build-system)
     (arguments (list #:tests? #f))      ; XXX: tests require networking
     (propagated-inputs (list python-requests))
-    (native-inputs (list python-black
-                         python-coverage
+    (native-inputs (list python-coverage
                          python-flake8
                          python-isort
                          python-pytest
-- 
2.41.0

[bug#70735] [PATCH 003/714] gnu: python-funsor: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-funsor):
  [native-inputs]: Remove python-black.

Change-Id: I2049ce0c0701f91a883646d40bd985f8a7bda7d9
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index e11a851105..62fe0d9980 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -173,8 +173,7 @@ (define-public python-funsor
     (propagated-inputs (list python-makefun python-multipledispatch
                              python-numpy python-opt-einsum
                              python-typing-extensions))
-    (native-inputs (list python-black
-                         python-flake8
+    (native-inputs (list python-flake8
                          python-isort
                          python-nbsphinx
                          python-pandas
-- 
2.41.0

[bug#70735] [PATCH 004/714] gnu: python-imbalanced-learn: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-imbalanced-learn):
  [native-inputs]: Remove python-black.

Change-Id: I238b32a50b8a025466108e1c836bac7c6e06a3fb
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 62fe0d9980..cec9b63f17 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1904,8 +1904,7 @@ (define-public python-imbalanced-learn
                               (getcwd)))))))
     (propagated-inputs (list python-joblib python-numpy python-scikit-learn
                              python-scipy python-threadpoolctl))
-    (native-inputs (list python-black
-                         python-flake8
+    (native-inputs (list python-flake8
                          python-keras
                          python-mypy
                          python-numpydoc
-- 
2.41.0

[bug#70735] [PATCH 005/714] gnu: python-hyperopt: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-hyperopt):
  [native-inputs]: Remove python-black.

Change-Id: I141e46fba9481df7bbb0d06e64de0cba0723fdc0
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index cec9b63f17..f316f4bbf1 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -2332,8 +2332,7 @@ (define-public python-hyperopt
            python-six
            python-tqdm))
     (native-inputs
-     (list python-black
-           python-nose
+     (list python-nose
            python-pymongo
            python-pytest
            python-wheel))
-- 
2.41.0

[bug#70735] [PATCH 006/714] gnu: python-captum: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-captum):
  [native-inputs]: Remove python-black.

Change-Id: Ifb7195e0b20763a4c3362b5b8fe74af1b91c0360
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index f316f4bbf1..fdeb7ab377 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -4528,7 +4528,6 @@ (define-public python-captum
      (list python-matplotlib python-numpy python-pytorch python-tqdm))
     (native-inputs (list jupyter
                          python-annoy
-                         python-black
                          python-flake8
                          python-flask
                          python-flask-compress
-- 
2.41.0

[bug#70735] [PATCH 007/714] gnu: python-pyro-ppl: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-pyro-ppl):
  [native-inputs]: Remove python-black.

Change-Id: Ib8f8da2faf4354ca52e0dbc44aa92b4854ec14d0
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index fdeb7ab377..3d93b029da 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5065,7 +5065,6 @@ (define-public python-pyro-ppl
     (native-inputs
      (list ninja
            jupyter
-           python-black
            python-flake8
            python-graphviz
            python-isort
-- 
2.41.0

[bug#70735] [PATCH 008/714] gnu: python-trezor: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/finance.scm (python-trezor):
  [native-inputs]: Remove python-black.

Change-Id: Ic70295eb8302a6ac449dd87479b8b4bbeb60b38f
---
 gnu/packages/finance.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index 8703120f2a..707342dbe2 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -1149,7 +1149,6 @@ (define-public python-trezor
            python-typing-extensions))
     (native-inputs ; Only needed for running the tests
      (list protobuf
-           python-black
            python-isort
            python-pillow
            python-protobuf
-- 
2.41.0

[bug#70735] [PATCH 009/714] gnu: python-openai: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-openai):
  [native-inputs]: Remove python-black.

Change-Id: Ie1d7f9fd55b35f9a5a514a318bd09338caa67a09
---
 gnu/packages/python-web.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 3fccdcdf59..cfd3755868 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -2152,7 +2152,7 @@ (define-public python-openai
  and not test_file_cli")))
     (propagated-inputs (list python-aiohttp python-requests python-tqdm
                              python-typing-extensions))
-    (native-inputs (list python-black python-pytest python-pytest-asyncio
+    (native-inputs (list python-pytest python-pytest-asyncio
                          python-pytest-mock python-setuptools python-wheel))
     (home-page "https://github.com/openai/openai-python")
     (synopsis "Python client library for the OpenAI API")
-- 
2.41.0

[bug#70735] [PATCH 010/714] gnu: python-starsessions-for-pytorch-lightning: Remove python-black.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-starsessions-for-pytorch-lightning):
  [native-inputs]: Remove python-black.

Change-Id: Id74da2f987ba02fd9c778fbcf9be7598c9367698
---
 gnu/packages/python-web.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index cfd3755868..3ae90c9360 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8932,8 +8932,7 @@ (define-public python-starsessions-for-pytorch-lightning
            python-itsdangerous
            python-starlette-for-fastapi-0.88))
     (native-inputs
-     (list python-black
-           python-flake8
+     (list python-flake8
            python-httpx
            python-mypy
            python-poetry-core
-- 
2.41.0

[bug#70735] [PATCH 011/714] gnu: python-graphtools: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/graph.scm (python-graphtools):
  [native-inputs]: Remove python-black.

Change-Id: Ia82aa4e2219da9242376c119b1fb71c6716f2e84
---
 gnu/packages/graph.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 1d98541a04..6839fc04db 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -467,7 +467,6 @@ (define-public python-graphtools
     (native-inputs
      (list util-linux ;for lscpu
            python-anndata
-           python-black
            python-coverage
            python-coveralls
            python-nose
-- 
2.41.0

[bug#70735] [PATCH 012/714] gnu: python-jupytext: Improve package style.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-jupytext): Improve package
style.
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:test-flags>: Add flags.
             <#:phases>: Remove 'check phase replacement.

Change-Id: I5d708c2fc76b609105c1551a6ed1755c56efcada
---
 gnu/packages/python-xyz.scm | 25 ++++++++++++-------------
 1 file changed, 12 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6338750d0b..51273ca91a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -404,26 +404,25 @@ (define-public python-jupytext
        (file-name (git-file-name name version))
        (sha256
         (base32 "0bgf0c4py22ip7qfla8mrmypfh3bg151c8awsr1gvcbw7m4ni01k"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags
+      '(list "-k" (string-append
+                   "not "
+                   (string-join
+                    (list "test_create_header_with_set_formats"
+                          "test_pre_commit_hook"
+                          "test_sync_with_pre_commit_hook")
+                    " and not ")))
       #:phases
       #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
+          (add-before 'check 'pre-check
+            (lambda _
               ;; some tests fail when HOME=/homeless-shelter.
               (setenv "HOME" "/tmp")
               ;; OSError: [Errno 18] Invalid cross-device link
-              (setenv "TMPDIR" "/tmp")
-              (when tests?
-                (let ((disabled-tests
-                       (list "test_create_header_with_set_formats"
-                             "test_pre_commit_hook"
-                             "test_sync_with_pre_commit_hook")))
-                  (invoke "pytest" "-vv" "-k"
-                          (string-append "not "
-                                         (string-join disabled-tests
-                                                      " and not "))))))))))
+              (setenv "TMPDIR" "/tmp"))))))
     (native-inputs
      (list git-minimal
            python-autopep8
-- 
2.41.0

[bug#70735] [PATCH 013/714] gnu: python-pydantic-cli: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-pydantic-cli):
  [native-inputs]: Remove python-black.

Change-Id: I11431925d2c3a226a399c0ec8a0f1f013df6062c
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 51273ca91a..a3a3e9cf82 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -7755,8 +7755,7 @@ (define-public python-pydantic-cli
     (propagated-inputs
      (list python-pydantic))
     (native-inputs
-     (list python-black
-           python-mypy
+     (list python-mypy
            python-pytest))
     (home-page "https://github.com/mpkocher/pydantic-cli")
     (synopsis "Turn Pydantic defined data models into CLI tools")
-- 
2.41.0

[bug#70735] [PATCH 014/714] gnu: python-imageio: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-imageio):
  [native-inputs]: Remove python-black.

Change-Id: I4ed34784b5230b06b81d5fba2ec984cf7913f7e4
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a3a3e9cf82..2c81cd2d51 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -10448,7 +10448,7 @@ (define-public python-imageio
     (propagated-inputs
      (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile python-setuptools))
     (native-inputs
-     (list python-black python-flake8 python-fsspec python-pytest
+     (list python-flake8 python-fsspec python-pytest
            python-pytest-cov python-wheel))
     (home-page "https://imageio.github.io/")
     (synopsis "Library for reading and writing a wide range of image data")
-- 
2.41.0

[bug#70735] [PATCH 015/714] gnu: python-isort: Improve package style.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-isort): Improve package style.
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:test-flags>: Add option to replace former check phase.
  <#:phases>: Remove phases build, install and check.

Change-Id: Idac8f151977f2494eb44d51aa1fcbf3156b5cc87
---
 gnu/packages/python-xyz.scm | 22 ++++------------------
 1 file changed, 4 insertions(+), 18 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2c81cd2d51..8be0040220 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -23654,19 +23654,13 @@ (define-public python-isort
        (sha256
         (base32
          "1vbwc4gpffclf6hw08lvvgqlvsgfjlw7gjsm28jfcrln2pixla7j"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags '(list "tests/unit/" "-k" "not test_gitignore"
+                          "--ignore=tests/unit/test_deprecated_finders.py")
       #:phases
       #~(modify-phases %standard-phases
-          (replace 'build
-            (lambda _
-              (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
-          (replace 'install
-            (lambda _
-              (let ((whl (car (find-files "dist" "\\.whl$"))))
-                (invoke "pip" "--no-cache-dir" "--no-input"
-                        "install" "--no-deps" "--prefix" #$output whl))))
           (add-after 'install 'install-example-plugins
             (lambda _
               (for-each (lambda (source-directory)
@@ -23680,15 +23674,7 @@ (define-public python-isort
               (setenv "HOME" (getcwd))
               (let ((example-whls (find-files "dist" "^example.*\\.whl$")))
                 (apply invoke "pip" "--no-cache-dir" "--no-input"
-                       "install"  "--user" "--no-deps" example-whls))))
-          (replace 'check
-            (lambda* (#:key tests? inputs outputs #:allow-other-keys)
-              (when tests?
-                (let ((bin (string-append #$output "/bin")))
-                  (setenv "PATH" (string-append (getenv "PATH") ":" bin)))
-                (invoke "pytest" "-vv" "tests/unit/"
-                        "-k" "not test_gitignore" ;requires git
-                        "--ignore=tests/unit/test_deprecated_finders.py")))))))
+                       "install"  "--user" "--no-deps" example-whls)))))))
     (native-inputs
      (list python-black
            python-colorama
-- 
2.41.0

[bug#70735] [PATCH 016/714] gnu: python-imageio: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-imageio):
  [native-inputs]: Remove python-black.

Change-Id: Ie868334f0c93f11449122cf6c213c5fbb08d1255
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 8be0040220..1433ddaff9 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -10448,7 +10448,7 @@ (define-public python-imageio
     (propagated-inputs
      (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile python-setuptools))
     (native-inputs
-     (list python-flake8 python-fsspec python-pytest
+     (list python-fsspec python-pytest
            python-pytest-cov python-wheel))
     (home-page "https://imageio.github.io/")
     (synopsis "Library for reading and writing a wide range of image data")
-- 
2.41.0

[bug#70735] [PATCH 017/714] gnu: python-minikanren: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-minikanren):
  [native-inputs]: Remove python-black.

Change-Id: I9e5f55fbf43d34435a983f6791ffabea9f284dd8
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 1433ddaff9..f3f88b1110 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -33393,7 +33393,6 @@ (define-public python-minikanren
            python-pytest
            python-pytest-cov
            python-pylint
-           python-black
            python-sympy
            python-versioneer
            python-coverage))
-- 
2.41.0

[bug#70735] [PATCH 018/714] gnu: python-eliot: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-eliot):
  [native-inputs]: Remove python-black.

Change-Id: I0559d1164f1b3c613550002b062c8a9e082481a0
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f3f88b1110..2cb851fa36 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -30714,8 +30714,7 @@ (define-public python-eliot
      (list python-boltons python-pyrsistent python-six
            python-zope-interface))
     (native-inputs
-     (list python-black
-           python-coverage
+     (list python-coverage
            python-dask
            python-flake8
            python-hypothesis
-- 
2.41.0

[bug#70735] [PATCH 019/714] gnu: python-update-checker: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-update-checker):
  [native-inputs]: Remove python-black.

Change-Id: I44b950199c325a836f87cae498902d338548cc28
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2cb851fa36..a8979dfdc0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -26741,7 +26741,7 @@ (define-public python-update-checker
         (base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba"))))
     (build-system python-build-system)
     (propagated-inputs (list python-requests))
-    (native-inputs (list python-black python-flake8 python-pytest))
+    (native-inputs (list python-flake8 python-pytest))
     (home-page "https://github.com/bboe/update_checker")
     (synopsis "Python module that will check for package updates")
     (description "This package provides a Python module that will check for
-- 
2.41.0

[bug#70735] [PATCH 020/714] gnu: python-doubletdetection: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-doubletdetection):
  [native-inputs]: Remove python-black.

Change-Id: I3c97789ea573dc62ae487908b8826f5d5f2c5217
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c93eaeba2f..1489b6c6fb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2051,8 +2051,7 @@ (define-public python-doubletdetection
            python-scipy
            python-tqdm))
     (native-inputs
-     (list python-black
-           python-flake8
+     (list python-flake8
            python-poetry-core
            python-pytest))
     (home-page "https://github.com/JonathanShor/DoubletDetection")
-- 
2.41.0

[bug#70735] [PATCH 021/714] gnu: python-liana-py: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-liana-py):
  [native-inputs]: Remove python-black.

Change-Id: I69f3d751318e2c3b9c4986d1ca1ea08716f2bb0b
---
 gnu/packages/bioinformatics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1489b6c6fb..1bcb803a03 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2157,7 +2157,7 @@ (define-public python-liana-py
                              python-tqdm
                              tzdata))
     (native-inputs
-     (list python-black python-pytest python-pytest-cov python-numpy))
+     (list python-pytest python-pytest-cov python-numpy))
     (home-page "https://github.com/saezlab/liana-py")
     (synopsis "LIANA is a ligand-receptor analysis framework")
     (description "This is a Ligand-Receptor inference framework.  The
-- 
2.41.0

[bug#70735] [PATCH 022/714] gnu: scvelo: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (scvelo):
  [native-inputs]: Remove python-black.

Change-Id: I61023231e6c38ffaa1048c42283730eec7f390ba
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1bcb803a03..5ffce8c453 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21546,8 +21546,7 @@ (define-public scvelo
            python-umap-learn
            pybind11))
     (native-inputs
-     (list python-black
-           python-flake8
+     (list python-flake8
            python-hypothesis
            python-pytest
            python-setuptools-scm
-- 
2.41.0

[bug#70735] [PATCH 023/714] gnu: python-black: Improve package style.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-black): Improve package style.
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:phases>: Improve style of use-absolute-file-names
  phase. Remove phase check.

Change-Id: If2da4b3b0fea4928d1aeb270fbaa4167f20a6ee5
---
 gnu/packages/python-xyz.scm | 18 ++++++------------
 1 file changed, 6 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a8979dfdc0..d4381ae4d2 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -7965,22 +7965,16 @@ (define-public python-black
        (sha256
         (base32
          "0yfahlqc7dsdp1js0cbv706apldnfnlbal9b53cww8n0hs40n0im"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      `(#:phases
        (modify-phases %standard-phases
          (add-after 'patch-source-shebangs 'use-absolute-file-names
-           (lambda* (#:key native-inputs inputs #:allow-other-keys)
-             (let* ((inpts (or native-inputs inputs))
-                    (python3 (search-input-file inpts "/bin/python3")))
-               (substitute* (find-files "tests" "\\.py$")
-                 (("#!/usr/bin/env python3(\\.[0-9]+)?" _ minor-version)
-                  (string-append "#!" python3 (if (string? minor-version)
-                                                  minor-version
-                                                  "")))))))
-         (replace 'check
-           (lambda* (#:key tests? #:allow-other-keys)
-             (when tests? (invoke "pytest" "-vv")))))))
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* (find-files "tests" "\\.py$")
+               (("#!/usr/bin/env python3")
+                (string-append
+                 "#!" (search-input-file inputs "/bin/python3")))))))))
     (propagated-inputs
      (list python-click
            python-attrs
-- 
2.41.0

[bug#70735] [PATCH 024/714] gnu: calibre: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/ebook.scm (calibre):
  [native-inputs]: Remove python-flake8.

Change-Id: I8cf61903ade3e753bb051edc74e3d034015323bf
---
 gnu/packages/ebook.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/ebook.scm b/gnu/packages/ebook.scm
index 16d4fcd6e3..3d536e59ad 100644
--- a/gnu/packages/ebook.scm
+++ b/gnu/packages/ebook.scm
@@ -154,7 +154,6 @@ (define-public calibre
     (native-inputs
      (list bash-minimal
            pkg-config
-           python-flake8
            python-pyqt-builder
            qtbase-5                     ; for qmake
            xdg-utils))
-- 
2.41.0

[bug#70735] [PATCH 025/714] gnu: mdpo: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/gettext.scm (mdpo):
  [native-inputs]: Remove python-flake8.

Change-Id: Id6083591aaa63f9fbc71ec6e17bf74421f942cb4
---
 gnu/packages/gettext.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/gettext.scm b/gnu/packages/gettext.scm
index 1408cc4cb4..bbb19bd4cb 100644
--- a/gnu/packages/gettext.scm
+++ b/gnu/packages/gettext.scm
@@ -214,7 +214,6 @@ (define-public mdpo
     (build-system python-build-system)
     (native-inputs
      (list python-bump2version
-           python-flake8
            python-flake8-implicit-str-concat
            python-flake8-print
            python-isort
-- 
2.41.0

[bug#70735] [PATCH 026/714] gnu: python-apprise: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-apprise):
  [native-inputs]: Remove python-flake8.

Change-Id: Ibbca97916ab4dab43bbc868d3a70fa50338dd1b6
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index d4381ae4d2..bd4f8d5254 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -318,7 +318,6 @@ (define-public python-apprise
     (native-inputs (list python-babel
                          python-coverage
                          python-cryptography
-                         python-flake8
                          python-paho-mqtt
                          python-pytest
                          python-pytest-cov
-- 
2.41.0

[bug#70735] [PATCH 027/714] gnu: python-colorful: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-colorful):
  [native-inputs]: Remove python-flake8.

Change-Id: Idf06bfd24676a4e3afec109420e65bde22000048
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index bd4f8d5254..5b6ccf32cd 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1072,8 +1072,7 @@ (define-public python-colorful
         (base32 "0kyy9qhvrb5m9h8xmri7c88i0k1g5qc7017anw39gx44an7mn33y"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-coverage python-flake8 python-pytest python-setuptools
-           python-wheel))
+     (list python-coverage python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-colorama))
     (home-page "http://github.com/timofurrer/colorful")
-- 
2.41.0

[bug#70735] [PATCH 028/714] gnu: python-pymd4c: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-pymd4c):
  [native-inputs]: Remove python-flake8.

Change-Id: Ic7e777d8518a6888a6df5da193d107d1ed4c601e
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5b6ccf32cd..cbb8f4f97c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2200,7 +2200,7 @@ (define-public python-pymd4c
     (inputs
      (list md4c))
     (native-inputs
-     (list python-flake8 python-pkgconfig pkg-config))
+     (list python-pkgconfig pkg-config))
     (home-page "https://github.com/dominickpastore/pymd4c")
     (synopsis "Python bindings for MD4C")
     (description
-- 
2.41.0

[bug#70735] [PATCH 029/714] gnu: python-pyls-black: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-pyls-black):
  [native-inputs]: Remove python-flake8.

Change-Id: Ifefa7600048cb08a93557c6389254c6fa89b24c2
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index cbb8f4f97c..cf76979679 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2858,7 +2858,7 @@ (define-public python-pyls-black
     (propagated-inputs
      (list python-black python-lsp-server python-tomli))
     (native-inputs
-     (list python-flake8 python-isort python-mypy python-pytest
+     (list python-isort python-mypy python-pytest
            python-pytest-runner python-setuptools python-wheel))
     (home-page "https://github.com/rupert/pyls-black")
     (synopsis "Black plugin for the Python Language Server")
-- 
2.41.0

[bug#70735] [PATCH 030/714] gnu: python-pypugjs: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-pypugjs):
  [native-inputs]: Remove python-flake8.

Change-Id: I2847b721968ecffa7c9caff60555ca6c6aae3b30
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index cf76979679..697dda5a1a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -6201,7 +6201,6 @@ (define-public python-pypugjs
     (native-inputs (list python-coverage
                          python-django
                          python-jinja2
-                         python-flake8
                          python-flask
                          python-mako
                          python-nose
-- 
2.41.0

[bug#70735] [PATCH 031/714] gnu: python-docx: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-docx):
  [native-inputs]: Remove python-flake8.

Change-Id: Id4d260ba5b567dd6450dbefa8fe67ad8f41981cb
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 697dda5a1a..4244860141 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -6742,7 +6742,6 @@ (define-public python-docx
     (build-system pyproject-build-system)
     (native-inputs
      (list behave
-           python-flake8
            python-mock
            python-pyparsing
            python-pytest
-- 
2.41.0

[bug#70735] [PATCH 032/714] gnu: python-importlib-resources: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-importlib-resources):
  [native-inputs]: Remove python-flake8.

Change-Id: I9f781c7ae87b27ef2f1cb9c1d963e763ec68f602
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 4244860141..041baa2272 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11248,8 +11248,7 @@ (define-public python-importlib-resources
              (setenv "PYTHONPATH"
                      (string-append (getcwd) "/_custom_build")))))))
     (native-inputs
-     (list python-flake8
-           python-pytest
+     (list python-pytest
            python-pytest-black
            python-pytest-checkdocs
            python-pytest-cov
-- 
2.41.0

[bug#70735] [PATCH 033/714] gnu: python-jaraco-test: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-jaraco-test):
  [native-inputs]: Remove python-flake8.

Change-Id: I8f020571913c84016729db9504f9aee42b5cdf26
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 041baa2272..46971528bc 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11616,8 +11616,7 @@ (define-public python-jaraco-test
                      (lambda _
                        (invoke "pytest" "-vv" "-k" "http"))))))
     (propagated-inputs (list python-jaraco-context python-jaraco-functools))
-    (native-inputs (list python-flake8
-                         python-pytest
+    (native-inputs (list python-pytest
                          python-pytest-black
                          python-pytest-checkdocs
                          python-pytest-cov
-- 
2.41.0

[bug#70735] [PATCH 034/714] gnu: python-seaborn: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-seaborn):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia3a3ccd36bff7ef10d16b56e58c7208f55332918
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 46971528bc..c6a537175c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -13340,8 +13340,7 @@ (define-public python-seaborn
            python-scipy
            python-statsmodels))
     (native-inputs
-     (list python-flake8
-           python-flit-core
+     (list python-flit-core
            python-ipykernel
            python-nbconvert
            python-numpydoc
-- 
2.41.0

[bug#70735] [PATCH 035/714] gnu: python-progressbar2: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-progressbar2):
  [native-inputs]: Remove python-flake8.

Change-Id: I1c00129eca86fef019810bac2a59d229790cfdce
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c6a537175c..7f2d56ac15 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -18243,8 +18243,7 @@ (define-public python-progressbar2
     (propagated-inputs
      (list python-six python-utils))
     (native-inputs
-     (list python-flake8
-           python-freezegun
+     (list python-freezegun
            python-pycodestyle
            python-pytest
            python-pytest-cache
-- 
2.41.0

[bug#70735] [PATCH 036/714] gnu: python-codespell: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-codespell):
  [arguments]: Remove uneeded field.
  [native-inputs]: Remove python-flake8.

Change-Id: I1ca51f5320527300a556e64c59c6c2c9d5230f23
---
 gnu/packages/python-xyz.scm | 14 +-------------
 1 file changed, 1 insertion(+), 13 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7f2d56ac15..4519b8468f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -19589,25 +19589,13 @@ (define-public python-codespell
     (inputs
       (list python-chardet))
     (native-inputs
-      (list python-flake8
-            python-pygments
+      (list python-pygments
             python-pytest
             python-pytest-cov
             python-pytest-dependency
             python-tomli
             python-setuptools
             python-wheel))
-    (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (replace 'check
-           (lambda* (#:key outputs tests? #:allow-other-keys)
-             (when tests?
-               ;; Make installed executable available for running the tests.
-               (setenv "PATH"
-                       (string-append (assoc-ref outputs "out") "/bin"
-                                      ":" (getenv "PATH")))
-               (invoke "pytest" "-vv")))))))
     (home-page "https://github.com/codespell-project/codespell/")
     (synopsis "Spellchecker for code")
     (description "Codespell fixes common misspellings in text files.
-- 
2.41.0

[bug#70735] [PATCH 037/714] gnu: python-inflect: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-inflect):
  [native-inputs]: Remove python-flake8.

Change-Id: Iff087e1ebb634f6cb99a00240f99a739ac8d0a9e
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 4519b8468f..48d68c075f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -20669,8 +20669,7 @@ (define-public python-inflect
              (setenv "PYTHONPATH"
                      (string-append (getcwd) "/_custom_build")))))))
     (propagated-inputs (list python-pydantic))
-    (native-inputs (list python-flake8
-                         python-pygments
+    (native-inputs (list python-pygments
                          python-pytest
                          python-pytest-black
                          python-pytest-checkdocs
-- 
2.41.0

[bug#70735] [PATCH 038/714] gnu: python-argcomplete: Remove python-mypy native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-argcomplete):
  [native-inputs]: Remove python-mypy.

Change-Id: Ie8dec41c6355f5ea2d41d5ca3902408006daf56c
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 48d68c075f..2583692e34 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -22757,7 +22757,6 @@ (define-public python-argcomplete
                (invoke "python3" "./test/test.py" "-v")))))))
     (native-inputs
      (list python-coverage
-           python-mypy
            python-pexpect
            python-setuptools
            python-setuptools-scm
-- 
2.41.0

[bug#70735] [PATCH 039/714] gnu: python-diff-cover: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-diff-cover):
  [native-inputs]: Remove python-flake8.

Change-Id: Ib4abb69410a3de90997ea7113965818c765a4ce0
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2583692e34..efa49a632c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -23864,8 +23864,7 @@ (define-public python-diff-cover
            python-setuptools ; For pkg_resources.
            python-tomli))
     (native-inputs
-     (list python-flake8
-           python-poetry-core
+     (list python-poetry-core
            python-pylint
            python-pytest
            python-pytest-flake8
-- 
2.41.0

[bug#70735] [PATCH 040/714] gnu: python-validators: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-validators):
  [native-inputs]: Remove python-flake8.

Change-Id: I740b0a63041ed2c453f2701cbf7de0eb997c7a5a
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index efa49a632c..2ac5a37dae 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24506,7 +24506,7 @@ (define-public python-validators
     (propagated-inputs
      (list python-decorator python-six))
     (native-inputs
-     (list python-flake8 python-isort python-pytest))
+     (list python-isort python-pytest))
     (home-page "https://github.com/kvesteri/validators")
     (synopsis "Data validation library")
     (description
-- 
2.41.0

[bug#70735] [PATCH 041/714] gnu: python-marshmallow: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-marshmallow):
  [native-inputs]: Remove python-flake8.

Change-Id: I4938c32b24975093322177ed224feddd5413299e
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2ac5a37dae..963f7cf127 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24575,8 +24575,7 @@ (define-public python-marshmallow
     (propagated-inputs
      (list python-packaging))
     (native-inputs
-     (list python-flake8
-           python-flake8-bugbear
+     (list python-flake8-bugbear
            python-mypy
            python-pytest
            python-pytz
-- 
2.41.0

[bug#70735] [PATCH 042/714] gnu: python-marshmallow-jsonapi: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-marshmallow-jsonapi):
  [native-inputs]: Remove python-flake8.

Change-Id: I6caf0b6f875c74af727629a463715fba480e2b3e
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 963f7cf127..3ec7f433ce 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24603,7 +24603,6 @@ (define-public python-marshmallow-jsonapi
      (list python-marshmallow))
     (native-inputs
      (list python-faker
-           python-flake8
            python-flake8-bugbear
            python-flask
            python-mock
-- 
2.41.0

[bug#70735] [PATCH 043/714] gnu: python-crds: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/astronomy.scm (python-crds):
  [native-inputs]: Remove python-flake8.

Change-Id: I01397ce66d7916d37a521fc6f91b118040c697ce
---
 gnu/packages/astronomy.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5bb8f858e6..3eb847e159 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2119,8 +2119,7 @@ (define-public python-crds
                              python-roman-datamodels
                              python-stsynphot
                              python-requests))
-    (native-inputs (list python-flake8
-                         python-ipython
+    (native-inputs (list python-ipython
                          python-lockfile
                          python-mock
                          python-nose
-- 
2.41.0

[bug#70735] [PATCH 044/714] gnu: python-doubletdetection: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-doubletdetection):
  [native-inputs]: Remove python-flake8.

Change-Id: Ifc842c4deb83fecec5b981fd5b9f3d2ee1056ef6
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5ffce8c453..7ed6cc06b6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2051,8 +2051,7 @@ (define-public python-doubletdetection
            python-scipy
            python-tqdm))
     (native-inputs
-     (list python-flake8
-           python-poetry-core
+     (list python-poetry-core
            python-pytest))
     (home-page "https://github.com/JonathanShor/DoubletDetection")
     (synopsis
-- 
2.41.0

[bug#70735] [PATCH 045/714] gnu: python-biom-format: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-biom-format):
  [native-inputs]: Remove python-flake8.

Change-Id: Iff59c5a55e678c814d6b92cc6bfc64425125c377
---
 gnu/packages/bioinformatics.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7ed6cc06b6..e7b6c14771 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2783,7 +2783,6 @@ (define-public python-biom-format
     (propagated-inputs
      (list python-anndata
            python-click
-           python-flake8
            python-future
            python-h5py
            python-numpy
-- 
2.41.0

[bug#70735] [PATCH 046/714] gnu: scvelo: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (scvelo):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia6a10051e10a6cf5e1da3e83fea810d2a15001b3
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e7b6c14771..9019ca8bab 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21544,8 +21544,7 @@ (define-public scvelo
            python-umap-learn
            pybind11))
     (native-inputs
-     (list python-flake8
-           python-hypothesis
+     (list python-hypothesis
            python-pytest
            python-setuptools-scm
            python-wheel))
-- 
2.41.0

[bug#70735] [PATCH 047/714] gnu: python-docker-pycreds: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/docker.scm (python-docker-pycreds):
  [native-inputs]: Remove python-flake8.

Change-Id: I98966a387f433b47698ffa8c8dec952b354dbd7a
---
 gnu/packages/docker.scm | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/docker.scm b/gnu/packages/docker.scm
index b18de182fe..adeff26af4 100644
--- a/gnu/packages/docker.scm
+++ b/gnu/packages/docker.scm
@@ -159,11 +159,9 @@ (define-public python-docker-pycreds
            (lambda _
              (substitute* "test-requirements.txt"
                (("3.0.2") ,(package-version python-pytest))
-               (("2.3.1") ,(package-version python-pytest-cov))
-               (("2.4.1") ,(package-version python-flake8)))
-             #t)))))
+               (("2.3.1") ,(package-version python-pytest-cov))))))))
     (native-inputs
-     (list python-flake8 python-pytest python-pytest-cov))
+     (list python-pytest python-pytest-cov))
     (propagated-inputs
      (list python-six))
     (home-page "https://github.com/shin-/dockerpy-creds")
-- 
2.41.0

[bug#70735] [PATCH 048/714] gnu: python-scikit-rf: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/engineering.scm (python-scikit-rf):
  [native-inputs]: Remove python-flake8.

Change-Id: I2696758390b686370196f69012a56a937908c49d
---
 gnu/packages/engineering.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 0a562b0158..d7fb51fc8b 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -2674,7 +2674,6 @@ (define-public python-scikit-rf
                              python-qtpy
                              python-scipy))
     (native-inputs (list python-coverage
-                         python-flake8
                          python-nbval
                          python-networkx
                          python-pytest
-- 
2.41.0

[bug#70735] [PATCH 049/714] gnu: python-mt-940: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/finance.scm (python-mt-940):
  [native-inputs]: Remove python-flake8.

Change-Id: I8ef4c9c2400e921e15abdc290efedbfd3a8f1017
---
 gnu/packages/finance.scm | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index 707342dbe2..db8209c5c8 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -2307,9 +2307,7 @@ (define-public python-mt-940
                         ;; Remove custom --cov flags.
                         (delete-file "pytest.ini")
                         (invoke "pytest" "-vv")))))))
-    (native-inputs (list python-flake8
-                         python-pytest
-                         python-pyyaml))
+    (native-inputs (list python-pytest python-pyyaml))
     (home-page "https://mt940.readthedocs.io/")
     (synopsis "Python parser for MT940-encoded SWIFT data")
     (description
-- 
2.41.0

[bug#70735] [PATCH 050/714] gnu: python-geopy: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/geo.scm (python-geopy):
  [native-inputs]: Remove python-flake8.

Change-Id: Ic534a7c209a465b3578c832873299760d6689862
---
 gnu/packages/geo.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index c89bd62128..48d83532fc 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -3154,7 +3154,6 @@ (define-public python-geopy
     (native-inputs
      (list python-async-generator
            python-coverage
-           python-flake8
            python-isort
            python-pytest
            python-pytest-aiohttp
-- 
2.41.0

[bug#70735] [PATCH 051/714] gnu: python-pygsp: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/graph.scm (python-pygsp):
  [native-inputs]: Remove python-flake8.

Change-Id: I94434121785eadff036d93061fdf07cb96b4ae3a
---
 gnu/packages/graph.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 6839fc04db..708977eb5a 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -554,7 +554,7 @@ (define-public python-pygsp
                (("suites.append\\(test_docstrings.*")
                 "")))))))
     (propagated-inputs (list python-numpy python-scikit-image python-scipy))
-    (native-inputs (list python-coverage python-coveralls python-flake8))
+    (native-inputs (list python-coverage python-coveralls))
     (home-page "https://github.com/epfl-lts2/pygsp")
     (synopsis "Graph Signal Processing in Python")
     (description "The PyGSP is a Python package to ease signal processing on
-- 
2.41.0

[bug#70735] [PATCH 052/714] gnu: python-uqbar: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/graphviz.scm (python-uqbar):
  [native-inputs]: Remove python-flake8.

Change-Id: If4bb2b2634e5f417794bd396f10e4bd93a602e8b
---
 gnu/packages/graphviz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index a0ea646193..777ba36346 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -220,7 +220,6 @@ (define-public python-uqbar
              #t)))))
     (native-inputs
      (list graphviz
-           python-flake8
            python-isort
            python-mypy
            python-pytest
-- 
2.41.0

[bug#70735] [PATCH 053/714] gnu: python-funsor: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-funsor):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia97f4628ca67de437ce1c2b55e3d751ef578df15
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 3d93b029da..9abaf56010 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -173,8 +173,7 @@ (define-public python-funsor
     (propagated-inputs (list python-makefun python-multipledispatch
                              python-numpy python-opt-einsum
                              python-typing-extensions))
-    (native-inputs (list python-flake8
-                         python-isort
+    (native-inputs (list python-isort
                          python-nbsphinx
                          python-pandas
                          python-pillow
-- 
2.41.0

[bug#70735] [PATCH 054/714] gnu: python-imbalanced-learn: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-imbalanced-learn):
  [native-inputs]: Remove python-flake8.

Change-Id: I5a598d53238d9c01606ac5527ebedbf3df77e56c
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 9abaf56010..c87e29be12 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1903,8 +1903,7 @@ (define-public python-imbalanced-learn
                               (getcwd)))))))
     (propagated-inputs (list python-joblib python-numpy python-scikit-learn
                              python-scipy python-threadpoolctl))
-    (native-inputs (list python-flake8
-                         python-keras
+    (native-inputs (list python-keras
                          python-mypy
                          python-numpydoc
                          python-pandas
-- 
2.41.0

[bug#70735] [PATCH 055/714] gnu: python-captum: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-captum):
  [native-inputs]: Remove python-flake8.

Change-Id: I46900f5d4dbabd37f24a6b82a9fefc54b6590581
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index c87e29be12..78b69ca3f2 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -4526,7 +4526,6 @@ (define-public python-captum
      (list python-matplotlib python-numpy python-pytorch python-tqdm))
     (native-inputs (list jupyter
                          python-annoy
-                         python-flake8
                          python-flask
                          python-flask-compress
                          python-ipython
-- 
2.41.0

[bug#70735] [PATCH 056/714] gnu: python-pyro-api: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-pyro-api):
  [native-inputs]: Remove python-flake8.

Change-Id: Idf00623f0b6029a5bde8636eaed45c47d81d57ae
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 78b69ca3f2..9b5aa07abc 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5012,8 +5012,7 @@ (define-public python-pyro-api
     (build-system python-build-system)
     (arguments '(#:tests? #false)) ;requires pyro
     (native-inputs
-     (list python-flake8
-           python-ipython
+     (list python-ipython
            python-pytest
            python-sphinx
            python-sphinx-rtd-theme))
-- 
2.41.0

[bug#70735] [PATCH 057/714] gnu: python-pyro-ppl: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-pyro-ppl):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia59826acaa25e0f92679e24c8f4d8728b791bab6
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 9b5aa07abc..688d902500 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5061,7 +5061,6 @@ (define-public python-pyro-ppl
     (native-inputs
      (list ninja
            jupyter
-           python-flake8
            python-graphviz
            python-isort
            python-lap
-- 
2.41.0

[bug#70735] [PATCH 058/714] gnu: python-linear-operator: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-linear-operator):
  [native-inputs]: Remove python-flake8.

Change-Id: Ica64069c1b2128047bd2d2b93301d6fd5e108ead
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 688d902500..5c67db26cf 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5107,8 +5107,7 @@ (define-public python-linear-operator
                              python-pytorch
                              python-scipy
                              python-typeguard))
-    (native-inputs (list python-flake8
-                         python-flake8-print
+    (native-inputs (list python-flake8-print
                          python-pytest
                          python-setuptools-scm
                          python-twine))
-- 
2.41.0

[bug#70735] [PATCH 059/714] gnu: python-gpytorch: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-gpytorch):
  [native-inputs]: Remove python-flake8.

Change-Id: I5ace15ffdbe533585b0a604347e195c9f864b15e
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 5c67db26cf..46683521f5 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5137,7 +5137,6 @@ (define-public python-gpytorch
                                        " and not test_t_matmul_matrix"))))
     (propagated-inputs (list python-linear-operator python-scikit-learn))
     (native-inputs (list python-coverage
-                         python-flake8
                          python-flake8-print
                          python-nbval
                          python-pytest
-- 
2.41.0

[bug#70735] [PATCH 060/714] gnu: python-mutagen: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/music.scm (python-mutagen):
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:test-flags>: Ignore flake8 quality tests.
  [native-inputs]: Remove python-flake8.

Change-Id: Ie7d2b26d6f4d9cdfdb022ea6d159c91325134320
---
 gnu/packages/music.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index a8901d24a6..e2d0cee7b5 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -3938,9 +3938,10 @@ (define-public python-mutagen
               (sha256
                (base32
                 "1qdk6i8gyhbi1c4j5jmbfpac3q8sff2ysri1pnp7nb9wzcp615v3"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags '(list "--ignore=tests/quality/test_flake8.py")
        #:phases
        #~(modify-phases %standard-phases
            (add-before 'check 'remove-hypothesis-deadlines
@@ -3951,7 +3952,7 @@ (define-public python-mutagen
                  (("( +)@given" all spaces)
                   (string-append spaces "@settings(deadline=None)\n" all))))))))
     (native-inputs
-     (list python-pytest python-hypothesis python-flake8))
+     (list python-pytest python-hypothesis))
     (home-page "https://mutagen.readthedocs.io/")
     (synopsis "Read and write audio tags")
     (description "Mutagen is a Python module to handle audio metadata.  It
-- 
2.41.0

[bug#70735] [PATCH 061/714] gnu: python-pure-protobuf: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/protobuf.scm (python-pure-protobuf):
  [arguments]<#:phases>: Remove flake8 invocation from check phase.
  [native-inputs]: Remove python-flake8.

Change-Id: I732aee31aff6e52984aeff0d4be6eafbae2d7a5c
---
 gnu/packages/protobuf.scm | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm
index 8ca730df3c..502ad09a3a 100644
--- a/gnu/packages/protobuf.scm
+++ b/gnu/packages/protobuf.scm
@@ -469,7 +469,7 @@ (define-public python-pure-protobuf
         (base32 "15dp5pvazd0jx4wzzh79080ah7hkpd3axh40al9vhzs2hf3v90hx"))))
     (build-system python-build-system)
     (native-inputs
-     (list python-flake8 python-pytest python-pytest-cov python-isort))
+     (list python-pytest python-pytest-cov python-isort))
     (arguments
      `(#:phases
        (modify-phases %standard-phases
@@ -477,8 +477,6 @@ (define-public python-pure-protobuf
            (lambda _
              (invoke "pytest" "--cov-report" "term-missing" "--cov"
                      "pure_protobuf")
-             (invoke "flake8" "pure_protobuf" "tests"
-                     "--ignore=F541")
              (invoke "isort" "-rc" "-c" "pure_protobuf" "tests"))))))
     (home-page "https://pypi.org/project/pure-protobuf/")
     (synopsis "Protobuf implementation using dataclasses")
-- 
2.41.0

[bug#70735] [PATCH 062/714] gnu: python-ovh: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-ovh):
  [native-inputs]: Remove python-flake8.

Change-Id: I10683f09aab22ce637eaf0a96a0ea1a7de788d07
---
 gnu/packages/python-web.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 3ae90c9360..31766b356d 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -975,7 +975,6 @@ (define-public python-ovh
     (arguments (list #:tests? #f))      ; XXX: tests require networking
     (propagated-inputs (list python-requests))
     (native-inputs (list python-coverage
-                         python-flake8
                          python-isort
                          python-pytest
                          python-pytest-cov
-- 
2.41.0

[bug#70735] [PATCH 063/714] gnu: python-furl: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-furl):
  [native-inputs]: Remove python-flake8.

Change-Id: I1b0f6747d7a2c93b053be88525bfe577f16c91a5
---
 gnu/packages/python-web.scm | 2 --
 1 file changed, 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 31766b356d..d509de15f6 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1239,8 +1239,6 @@ (define-public python-furl
     (build-system python-build-system)
     (propagated-inputs
      (list python-six python-orderedmultidict))
-    (native-inputs
-     (list python-flake8))
     (home-page "https://github.com/gruns/furl")
     (synopsis "URL manipulation in Python")
     (description "Furl provides an easy-to-use alternative to the
-- 
2.41.0

[bug#70735] [PATCH 064/714] gnu: python-httplib2: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-httplib2):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia9cc0ed55faaea65f6769fae052c6809cffd99a8
---
 gnu/packages/python-web.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index d509de15f6..a2456cb15e 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1271,7 +1271,6 @@ (define-public python-httplib2
                  (("==") ">=")))))))
     (native-inputs
      (list python-cryptography
-           python-flake8
            python-future
            python-mock
            python-pytest
-- 
2.41.0

[bug#70735] [PATCH 065/714] gnu: python-http-ece: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-http-ece):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia22d6ab59aa65a7f77d58da9e70140d0dc17325b
---
 gnu/packages/python-web.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index a2456cb15e..12536e715d 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -7283,7 +7283,7 @@ (define-public python-http-ece
     (propagated-inputs
      (list python-cryptography))
     (native-inputs
-     (list python-coverage python-flake8 python-mock python-nose))
+     (list python-coverage python-mock python-nose))
     (home-page "https://github.com/web-push-libs/encrypted-content-encoding")
     (synopsis "Encrypted Content Encoding for HTTP")
     (description
-- 
2.41.0

[bug#70735] [PATCH 066/714] gnu: python-woob: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-woob):
  [native-inputs]: Remove python-flake8.

Change-Id: I2d2ae0b058551852c760adaeae8db275c0c46312
---
 gnu/packages/python-web.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 12536e715d..679030d13b 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8288,8 +8288,7 @@ (define-public python-woob
            python-six
            python-unidecode))
     (native-inputs
-     (list python-coverage python-flake8 python-nose python-selenium
-           python-xunitparser))
+     (list python-coverage python-nose python-selenium python-xunitparser))
     (home-page "https://woob.tech/")
     (synopsis "Woob, Web Outside Of Browsers")
     (description "Woob is a collection of applications able to interact with
-- 
2.41.0

[bug#70735] [PATCH 067/714] gnu: python-starsessions-for-pytorch-lightning: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-starsessions-for-pytorch-lightning):
  [native-inputs]: Remove python-flake8.

Change-Id: I628228d21fab2e237afcbc8ba8724d33c0f3ea01
---
 gnu/packages/python-web.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 679030d13b..d019d6b299 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8927,8 +8927,7 @@ (define-public python-starsessions-for-pytorch-lightning
            python-itsdangerous
            python-starlette-for-fastapi-0.88))
     (native-inputs
-     (list python-flake8
-           python-httpx
+     (list python-httpx
            python-mypy
            python-poetry-core
            python-pytest
-- 
2.41.0

[bug#70735] [PATCH 068/714] gnu: python-apispec: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-apispec):
  [native-inputs]: Remove python-flake8.

Change-Id: I4438d8aa6fea5d1cbb7e205462615c4ed4f0fafa
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3ec7f433ce..71306802ef 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24637,8 +24637,7 @@ (define-public python-apispec
     (propagated-inputs
      (list python-packaging))
     (native-inputs
-     (list python-flake8
-           python-flake8-bugbear
+     (list python-flake8-bugbear
            python-marshmallow
            python-mypy
            python-pytest
-- 
2.41.0

[bug#70735] [PATCH 069/714] gnu: python-apispec-webframeworks: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-apispec-webframeworks):
  [native-inputs]: Remove python-flake8.

Change-Id: I7adfa47ac2d9fdb2e349bbe20059f9567848b7cd
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 71306802ef..61618265c0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24665,7 +24665,6 @@ (define-public python-apispec-webframeworks
     (propagated-inputs (list python-apispec python-setuptools))
     (native-inputs
      (list python-bottle
-           python-flake8
            python-flake8-bugbear
            python-flask
            python-mock
-- 
2.41.0

[bug#70735] [PATCH 070/714] gnu: python-flasgger: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-flasgger):
  [native-inputs]: Remove python-flake8.

Change-Id: I35d38195a30074c278343dab2e4c4cb5979a1163
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 61618265c0..55458e282d 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24713,7 +24713,6 @@ (define-public python-flasgger
      (list python-apispec
            python-apispec-webframeworks
            python-decorator
-           python-flake8
            python-flask-jwt
            python-flask-restful
            python-flex
-- 
2.41.0

[bug#70735] [PATCH 071/714] gnu: python-yq: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-yq):
  [native-inputs]: Remove python-flake8.

Change-Id: I48bc10bf085b1c85e35d0d92be06de84a7b334dc
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 55458e282d..0f0a0cacaa 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -25701,7 +25701,7 @@ (define-public python-yq
     (inputs
      (list python-argcomplete python-pyyaml python-xmltodict python-toml jq))
     (native-inputs
-     (list python-coverage python-flake8 python-setuptools-scm python-wheel))
+     (list python-coverage python-setuptools-scm python-wheel))
     (home-page "https://github.com/kislyuk/yq")
     (synopsis "Command-line YAML/XML processor")
     (description
-- 
2.41.0

[bug#70735] [PATCH 072/714] gnu: python-update-checker: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-update-checker):
  [native-inputs]: Remove python-flake8.

Change-Id: I539d556abf5a881b2cf308b0412f5b71f717c7fb
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0f0a0cacaa..c96235ea04 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -26707,7 +26707,7 @@ (define-public python-update-checker
         (base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba"))))
     (build-system python-build-system)
     (propagated-inputs (list python-requests))
-    (native-inputs (list python-flake8 python-pytest))
+    (native-inputs (list python-pytest))
     (home-page "https://github.com/bboe/update_checker")
     (synopsis "Python module that will check for package updates")
     (description "This package provides a Python module that will check for
-- 
2.41.0

[bug#70735] [PATCH 073/714] gnu: python-eliot: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-eliot):
  [native-inputs]: Remove python-flake8.

Change-Id: I9bd8eed21fa875c4a9e2ba313d2e8ee4d4b51fb9
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c96235ea04..7be9e982f0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -30682,7 +30682,6 @@ (define-public python-eliot
     (native-inputs
      (list python-coverage
            python-dask
-           python-flake8
            python-hypothesis
            python-pytest
            python-setuptools
-- 
2.41.0

[bug#70735] [PATCH 074/714] gnu: python-dateparser: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-dateparser):
  [native-inputs]: Remove python-flake8.

Change-Id: I5e9b419b4a9d23cac5a612b86168250b487f7cad
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7be9e982f0..2594345f83 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -31476,7 +31476,7 @@ (define-public python-dateparser
      (list python-dateutil python-pytz python-regex python-ruamel.yaml
            python-tzlocal))
     (native-inputs
-     (list python-flake8 python-pytest python-parameterized tzdata-for-tests
+     (list python-pytest python-parameterized tzdata-for-tests
            python-setuptools python-wheel))
     (arguments
      `(#:phases
-- 
2.41.0

[bug#70735] [PATCH 075/714] gnu: python-versioneer: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-versioneer):
  [arguments]<#:phases>: Remove flake8 invocation during check phase.
  [native-inputs]: Remove python-flake8.

Change-Id: Ied4ee355674413f99f4625b499d9418bdaf3e9e1
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2594345f83..11407c3720 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -31962,11 +31962,10 @@ (define-public python-versioneer
                 (invoke "pyflakes" "setup.py" "versioneer.py" "git_version.py")
                 (invoke "python" "test/run_pyflakes_src.py")
                 (invoke "pyflakes" "test")
-                (invoke "flake8" "git_version.py" "versioneer.py")
                 (invoke "pycodestyle" "--max-line-length=88"
                         "git_version.py" "versioneer.py")))))))
     (native-inputs
-     (list git-minimal python-flake8 python-pycodestyle python-pyflakes
+     (list git-minimal python-pycodestyle python-pyflakes
            python-pypa-build python-setuptools python-wheel))
     (propagated-inputs
      (list python-tomli))
-- 
2.41.0

[bug#70735] [PATCH 076/714] gnu: python-jinja2-cli: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-jinja2-cli):
  [native-inputs]: Remove python-flake8.

Change-Id: I2227be027b43a3d99fd67f257bc82ade75f16c86
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 11407c3720..4474fa473a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -32717,7 +32717,7 @@ (define-public python-jinja2-cli
     (propagated-inputs
       (list python-jinja2))
     (native-inputs
-      (list python-flake8 python-jinja2 python-pytest))
+      (list python-jinja2 python-pytest))
     (home-page "https://github.com/mattrobenolt/jinja2-cli")
     (synopsis "Command-line interface to Jinja2")
     (description
-- 
2.41.0

[bug#70735] [PATCH 077/714] gnu: nikola: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (nikola):
  [native-inputs]: Remove python-flake8.

Change-Id: I639daa3b94f9c597188d5388cf98eeeaf6be6b66
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 4474fa473a..c6fe720eea 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -34314,7 +34314,6 @@ (define-public nikola
             python-yapsy))
     (native-inputs
       (list python-coverage
-            python-flake8
             python-freezegun
             python-pytest
             python-pytest-cov))
-- 
2.41.0

[bug#70735] [PATCH 078/714] gnu: python-verspec: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-verspec):
  [native-inputs]: Remove python-flake8.

Change-Id: Ica0c1c691bb8a3eb5781d28bacfba6585b236bde
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c6fe720eea..f6f7f6e6e7 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -34779,7 +34779,7 @@ (define-public python-verspec
                (base32
                 "07n06wv85fm4vl1ird2mja0823js3x322wgs9gdnq1djjyk4ql64"))))
     (build-system python-build-system)
-    (native-inputs (list python-coverage python-flake8 python-mypy
+    (native-inputs (list python-coverage python-mypy
                          python-pretend python-pytest))
     (arguments
      `(#:phases (modify-phases %standard-phases
-- 
2.41.0

[bug#70735] [PATCH 079/714] gnu: python-mike: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-mike):
  [native-inputs]: Remove python-flake8.

Change-Id: Iedfcce33b515b95322576c5394df91f7c5549542
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f6f7f6e6e7..5f541e674a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -35164,7 +35164,7 @@ (define-public python-mike
                 "0yxp816x7s948xsd0fifvq9shg01xdxlifd9rzf5y2rd9iwz3hsn"))))
     (build-system python-build-system)
     (native-inputs
-     (list python-coverage python-flake8 python-shtab))
+     (list python-coverage python-shtab))
     (propagated-inputs
      (list python-jinja2 python-mkdocs python-pyyaml python-verspec))
     (home-page "https://github.com/jimporter/mike")
-- 
2.41.0

[bug#70735] [PATCH 080/714] gnu: python-arpeggio: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-arpeggio):
  [native-inputs]: Remove python-flake8.

Change-Id: I447e580cf6ac8308313f00ae0c63f2f0e9a33e76
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5f541e674a..4ce25fe5bc 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -35188,7 +35188,6 @@ (define-public python-arpeggio
     (build-system python-build-system)
     (native-inputs (list python-coverage
                          python-coveralls
-                         python-flake8
                          python-mike
                          python-mkdocs
                          python-pytest
-- 
2.41.0

[bug#70735] [PATCH 081/714] gnu: python-dolfin-adjoint: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/simulation.scm (python-dolfin-adjoint):
  [native-inputs]: Remove python-flake8.

Change-Id: Ic641283337cccc6b509da38f02997e6bac92c98e
---
 gnu/packages/simulation.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index b2fb123815..adc0571f50 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -1219,7 +1219,6 @@ (define-public python-dolfin-adjoint
      (list pkg-config
            python-coverage
            python-decorator
-           python-flake8
            python-pkgconfig
            python-pytest))
     (propagated-inputs
-- 
2.41.0

[bug#70735] [PATCH 082/714] gnu: python-statsmodels: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/statistics.scm (python-statsmodels):
  [native-inputs]: Remove python-flake8.

Change-Id: I48bfaf908bf2d1e88362437eb172627a0c1b5e07
---
 gnu/packages/statistics.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 2aae5f19ad..951dd1f304 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2437,7 +2437,6 @@ (define-public python-statsmodels
     (native-inputs
      (list python-colorama
            python-cython
-           python-flake8
            python-isort
            python-joblib
            python-matplotlib
-- 
2.41.0

[bug#70735] [PATCH 083/714] gnu: python-panflute: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/textutils.scm (python-panflute):
  [native-inputs]: Remove python-flake8.

Change-Id: I9f6983f302e8c9cb23306950258277ae5c93ce8b
---
 gnu/packages/textutils.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index 4374f59ffa..dc72ed2330 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -1549,7 +1549,6 @@ (define-public python-panflute
     (propagated-inputs (list python-click python-pyyaml))
     (native-inputs (list python-configparser
                          python-coverage
-                         python-flake8
                          python-pandocfilters
                          python-pytest
                          python-pytest-cov
-- 
2.41.0

[bug#70735] [PATCH 084/714] gnu: sshuttle: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/vpn.scm (sshuttle):
  [native-inputs]: Remove python-flake8.

Change-Id: I0e08c16841a475991a593dbaf747b945cc89cb76
---
 gnu/packages/vpn.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index 7823ef19eb..53faf3e6bc 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -980,7 +980,6 @@ (define-public sshuttle
     (native-inputs
      (list python-setuptools-scm
            ;; For tests only.
-           python-flake8
            python-mock
            python-pytest-cov
            python-pytest-runner))
-- 
2.41.0

[bug#70735] [PATCH 085/714] gnu: qtile: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/wm.scm (qtile):
  [native-inputs]: Remove python-flake8.

Change-Id: Icdf708222a4ff538c03d5949a886dca112311075
---
 gnu/packages/wm.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 6d2484a7fa..3c371e8d95 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -639,7 +639,6 @@ (define-public qtile
             python-xcffib))
     (native-inputs
       (list pkg-config
-            python-flake8
             python-pep8-naming
             python-psutil
             python-pytest-cov
-- 
2.41.0

[bug#70735] [PATCH 086/714] gnu: python-http-ece: Update to 1.2.0.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-http-ece): Update to 1.2.0.

Change-Id: I8d82959841b64db48eb01b88914298ba12f1a388
---
 gnu/packages/python-web.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index d019d6b299..0b60f5248e 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -7263,7 +7263,7 @@ (define-public python-js2py
 (define-public python-http-ece
   (package
     (name "python-http-ece")
-    (version "1.1.0")
+    (version "1.2.0")
     (source
       (origin
         (method git-fetch)
@@ -7273,7 +7273,7 @@ (define-public python-http-ece
         (file-name (git-file-name name version))
         (sha256
          (base32
-          "0bp4cc0xc123i72h80ax3qz3ixfwx3j7pw343kc7i6kdvfi8klx7"))))
+          "11v9cpmx4jc0nk25af96plzjz3mg1ysm1m001nx6jns06hil1gpy"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
-- 
2.41.0

[bug#70735] [PATCH 087/714] gnu: python-androguard: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/android.scm (python-androguard):
  [native-inputs]: Remove python-coverage.

Change-Id: I693508bbac1d23a70fdd19b6508809cc33e60b65
---
 gnu/packages/android.scm | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/android.scm b/gnu/packages/android.scm
index b5b1b75fba..14219b2849 100644
--- a/gnu/packages/android.scm
+++ b/gnu/packages/android.scm
@@ -1071,11 +1071,9 @@ (define-public python-androguard
          (replace 'check
            ;; Adapted from .travis.yml
            (lambda _
-             (invoke "nosetests" "--with-coverage" "--with-timer"
-                     "--timer-top-n" "50"))))))
+             (invoke "nosetests" "--with-timer" "--timer-top-n" "50"))))))
     (native-inputs
-     (list python-codecov python-coverage python-mock python-nose
-           python-nose-timer))
+     (list python-codecov python-mock python-nose python-nose-timer))
     (propagated-inputs
      (list python-asn1crypto
            python-colorama
-- 
2.41.0

[bug#70735] [PATCH 088/714] gnu: python-astropy: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/astronomy.scm (python-astropy):
  [native-inputs]: Remove python-coverage.

Change-Id: Ibe31312409bf70d7ecb7a6f65a47982ba02edb3c
---
 gnu/packages/astronomy.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 3eb847e159..b44bca6e59 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1620,7 +1620,6 @@ (define-public python-astropy
     (native-inputs
      (list pkg-config
            python-colorlog
-           python-coverage
            python-cython-3
            python-extension-helpers
            python-h5py
-- 
2.41.0

[bug#70735] [PATCH 089/714] gnu: python-poliastro: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/astronomy.scm (python-poliastro):
  [native-inputs]: Remove python-coverage.

Change-Id: Ic81b78226bfd239cb8ccdafe29992cc47df31496
---
 gnu/packages/astronomy.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b44bca6e59..a17f2d2026 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2524,8 +2524,7 @@ (define-public python-poliastro
             (lambda _
               (setenv "HOME" "/tmp"))))))
     (native-inputs
-     (list python-coverage
-           python-hypothesis
+     (list python-hypothesis
            python-mypy
            python-flit-core
            python-pytest
-- 
2.41.0

[bug#70735] [PATCH 090/714] gnu: python-ega-download-client: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-ega-download-client):
  [native-inputs]: Remove python-coverage.

Change-Id: Ic270422866db874900ae0eba99fb3264de585390
---
 gnu/packages/bioinformatics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9019ca8bab..c7fe02132e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2577,7 +2577,7 @@ (define-public python-ega-download-client
                (("==") ">=")))))))
     (propagated-inputs (list python-htsget python-psutil python-requests
                              python-tqdm python-urllib3))
-    (native-inputs (list python-coverage python-pytest python-pyfakefs
+    (native-inputs (list python-pytest python-pyfakefs
                          python-responses python-mock))
     (home-page "https://github.com/EGA-archive/ega-download-client")
     (synopsis "EGA download client")
-- 
2.41.0

[bug#70735] [PATCH 091/714] gnu: python-scikit-bio: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-scikit-bio):
  [native-inputs]: Remove python-coverage.

Change-Id: Ia5bf6e91757c5c9ca2962e9a472e5112e747919d
---
 gnu/packages/bioinformatics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c7fe02132e..1954e992d8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5125,7 +5125,7 @@ (define-public python-scikit-bio
            python-requests
            python-scipy))
     (native-inputs
-     (list python-coverage python-pytest))
+     (list python-pytest))
     (home-page "https://scikit-bio.org")
     (synopsis "Data structures, algorithms and educational resources for bioinformatics")
     (description
-- 
2.41.0

[bug#70735] [PATCH 092/714] gnu: python-cooler: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-cooler):
  [native-inputs]: Remove python-coverage.

Change-Id: I7a413db0443c01b5e92541a9524ed0498189ea7d
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1954e992d8..918f124d98 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17656,8 +17656,7 @@ (define-public python-cooler
            python-scipy
            python-simplejson))
     (native-inputs
-     (list python-coverage
-           python-hatchling
+     (list python-hatchling
            python-isort
            python-pytest
            python-pytest-cov))
-- 
2.41.0

[bug#70735] [PATCH 093/714] gnu: u-boot-tools: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bootloaders.scm (u-boot-tools):
  [native-inputs]: Remove python-coverage.
  [arguments]<#:phases>: Adapt patch phase.

Change-Id: I94394544079197b4a3f8c53cc0b3d78d1f5dc8be
---
 gnu/packages/bootloaders.scm | 17 ++++-------------
 1 file changed, 4 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm
index 0e7bc66bd7..cf568b2bd6 100644
--- a/gnu/packages/bootloaders.scm
+++ b/gnu/packages/bootloaders.scm
@@ -802,8 +802,7 @@ (define-public u-boot-tools
     (name "u-boot-tools")
     (native-inputs
      (modify-inputs (package-native-inputs u-boot)
-       (prepend python-coverage
-                python-filelock
+       (prepend python-filelock
                 python-pycryptodomex
                 python-pytest
                 python-pytest-xdist
@@ -820,14 +819,6 @@ (define-public u-boot-tools
                (("/bin/false") (which "false")))
              (substitute* "tools/dtoc/fdt_util.py"
                (("'cc'") "'gcc'"))
-             (substitute* "tools/u_boot_pylib/test_util.py"
-               ;; python3-coverage is simply called coverage in guix.
-               (("python3-coverage") "coverage")
-
-               ;; Don't require 100% coverage since it's brittle and can
-               ;; fail with newer versions of coverage or dependencies.
-               (("raise ValueError\\('Test coverage failure'\\)")
-                "print('Continuing anyway since Guix does not care :O')"))
              (substitute* "test/run"
                ;; Make it easier to find test failures.
                (("#!/bin/bash") "#!/bin/bash -x")
@@ -838,9 +829,9 @@ (define-public u-boot-tools
                ;; FIXME: test_spl fails, needs further investiation
                (("test_ofplatdata or test_handoff or test_spl")
                 "test_ofplatdata or test_handoff")
-               ;; FIXME: code coverage not working
-               (("run_test \"binman code coverage\"")
-                "# run_test \"binman code coverage\"")
+               ;; Disable code coverage tests.
+               (("run_test \"(\\w+) code coverage\"" all)
+                (string-append "# " all))
                ;; This test would require internet access.
                (("\\./tools/buildman/buildman") (which "true")))
              (substitute* "test/py/tests/test_sandbox_exit.py"
-- 
2.41.0

[bug#70735] [PATCH 094/714] gnu: python-pytest-randomly: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/check.scm (python-pytest-randomly):
  [native-inputs]: Remove python-coverage.

Change-Id: I652fb11a3608e047b565bc3d4458a3efb9c4709d
---
 gnu/packages/check.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 64076a4547..2f9533cf09 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1602,8 +1602,7 @@ (define-public python-pytest-randomly
                          "not reordered "
                          "and not test_it_runs_before_stepwise "
                          "and not test_entrypoint_injection"))))))))
-    (native-inputs (list python-coverage
-                         python-factory-boy
+    (native-inputs (list python-factory-boy
                          python-faker
                          python-numpy
                          python-pytest-xdist))
-- 
2.41.0

[bug#70735] [PATCH 095/714] gnu: python-pytest-flakes: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/check.scm (python-pytest-flakes):
  [native-inputs]: Remove python-coverage.

Change-Id: Ia33921bc6481bf6ebd6e88d5a28e2e19579b6f91
---
 gnu/packages/check.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 2f9533cf09..5f52109f11 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -2728,7 +2728,7 @@ (define-public python-pytest-flakes
              (add-installed-pythonpath inputs outputs)
              (invoke "py.test" "-vv" "-k" "not test_syntax_error"))))))
     (native-inputs
-     (list python-coverage python-pytest python-pytest-pep8))
+     (list python-pytest python-pytest-pep8))
     (propagated-inputs
      (list python-pyflakes))
     (home-page "https://github.com/fschulze/pytest-flakes")
-- 
2.41.0

[bug#70735] [PATCH 096/714] gnu: python-aiounittest: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/check.scm (python-aiounittest):
  [native-inputs]: Remove python-coverage.

Change-Id: I0a6795559fd409bdba1d69c60692dc228d2bc17c
---
 gnu/packages/check.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 5f52109f11..3b89eacb1d 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -3587,7 +3587,7 @@ (define-public python-aiounittest
                       #t)))))
     (propagated-inputs (list python-wrapt))
     (native-inputs
-     (list python-coverage python-nose))
+     (list python-nose))
     (home-page
      "https://github.com/kwarunek/aiounittest")
     (synopsis "Test asyncio code more easily")
-- 
2.41.0

[bug#70735] [PATCH 097/714] gnu: python-aiosqlite: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/databases.scm (python-aiosqlite):
  [arguments]<#:phases>: Adapt check phase.
  [native-inputs]: Remove python-coverage.

Change-Id: I165d174426022f0603223e3def91ffe280f15899
---
 gnu/packages/databases.scm | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 1ac5d35056..955eed7cef 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3936,15 +3936,13 @@ (define-public python-aiosqlite
                 "1a8sggh1wwbpl46k5qcfmp97s9hjysna0x7mwwc53kyfm0m95wf8"))))
     (build-system pyproject-build-system)
     (arguments
-     (list #:phases #~(modify-phases %standard-phases
-                        (replace 'check
-                          (lambda* (#:key tests? #:allow-other-keys)
-                            (when tests?
-                              (invoke "python" "-m" "coverage" "run" "-m"
-                                      "aiosqlite.tests")
-                              (invoke "python" "-m" "coverage" "report")))))))
+     (list #:phases
+           #~(modify-phases %standard-phases
+               (replace 'check
+                 (lambda* (#:key tests? #:allow-other-keys)
+                   (when tests?
+                     (invoke "python" "-m" "aiosqlite.tests")))))))
     (native-inputs (list python-flit-core
-                         python-coverage
                          python-mypy))
     (home-page "https://github.com/jreese/aiosqlite")
     (synopsis
-- 
2.41.0

[bug#70735] [PATCH 098/714] gnu: reprotest: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/diffoscope.scm (reprotest):
  [native-inputs]: Remove python-coverage.

Change-Id: I4d9e11f2f416524e910b9b0508caac24d158953a
---
 gnu/packages/diffoscope.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/diffoscope.scm b/gnu/packages/diffoscope.scm
index 5bbb4f51e2..5d38a612da 100644
--- a/gnu/packages/diffoscope.scm
+++ b/gnu/packages/diffoscope.scm
@@ -262,7 +262,6 @@ (define-public reprotest
      `(("diffoscope" ,diffoscope)
        ("help2man" ,help2man)
        ("libfaketime" ,libfaketime)
-       ("python-coverage" ,python-coverage)
        ("python-docutils" ,python-docutils)
        ("python-magic " ,python-magic)
        ("python-pytest " ,python-pytest)
-- 
2.41.0

[bug#70735] [PATCH 099/714] gnu: python-django-localflavor: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/django.scm (python-django-localflavor):
  [native-inputs]: Remove python-coverage.

Change-Id: I6fd3d0b5a3c671bb0ec06018becac745512e29e8
---
 gnu/packages/django.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 6a373be359..28866abf93 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -296,7 +296,7 @@ (define-public python-django-localflavor
                                       (getenv "GUIX_PYTHONPATH")))
                (invoke "invoke" "test")))))))
     (native-inputs
-     (list python-coverage python-invoke python-pytest-django which))
+     (list python-invoke python-pytest-django which))
     (propagated-inputs
      (list python-django python-stdnum))
     (home-page "https://django-localflavor.readthedocs.io/en/latest/")
-- 
2.41.0

[bug#70735] [PATCH 100/714] gnu: python-django-haystack: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/django.scm (python-django-haystack):
  [native-inputs]: Remove python-coverage.

Change-Id: If9aba668d50095322cc3f798bae831d704421661
---
 gnu/packages/django.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 28866abf93..c43b9891a8 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -496,7 +496,6 @@ (define-public python-django-haystack
      (list python-django))
     (native-inputs
      (list gdal
-           python-coverage
            python-dateutil
            python-geopy
            python-mock
-- 
2.41.0

[bug#70735] [PATCH 101/714] gnu: python-scikit-rf: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/engineering.scm (python-scikit-rf):
  [native-inputs]: Remove python-coverage.

Change-Id: Iac1f9876a0fcb500ca100d20f48ebae7e324e4b9
---
 gnu/packages/engineering.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index d7fb51fc8b..e550644a92 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -2673,8 +2673,7 @@ (define-public python-scikit-rf
                              python-pyqtgraph
                              python-qtpy
                              python-scipy))
-    (native-inputs (list python-coverage
-                         python-nbval
+    (native-inputs (list python-nbval
                          python-networkx
                          python-pytest
                          python-pytest-cov
-- 
2.41.0

[bug#70735] [PATCH 001/714] gnu: python-transient: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

Hi,

Sorry for the bad send yesterday, this should be fixed by closing the
issues opened.

It seems I can't send more than 100 patches at once, thus I'll need to
merge some patches. Sending a v2 after that.

Nicolas


On 2024-05-04 00:18, Nicolas Graves wrote:

> * gnu/packages/virtualization.scm (python-transient):
>   [native-inputs]: Remove python-black.
>
> Change-Id: Id965a243ebf42ad249e63e9ad6f4fb22e39c3876
> ---
>  gnu/packages/virtualization.scm | 2 +-
>  1 file changed, 1 insertion(+), 1 deletion(-)
>
> diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
> index f366388623..1bfa31b7d3 100644
> --- a/gnu/packages/virtualization.scm
> +++ b/gnu/packages/virtualization.scm
> @@ -2777,7 +2777,7 @@ (define-public python-transient
>             python-requests
>             python-toml))
>      (native-inputs
> -     (list python-black python-mypy python-pyhamcrest python-twine))
> +     (list python-mypy python-pyhamcrest python-twine))
>      (home-page "https://github.com/ALSchwalm/transient")
>      (synopsis "QEMU Wrapper written in Python")
>      (description

-- 
Best regards,
Nicolas Graves