[bug#70739] [PATCH 001/714] gnu: python-transient: Remove python-black native-input.

[bug#70739] [PATCH 001/714] gnu: python-transient: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/virtualization.scm (python-transient):
  [native-inputs]: Remove python-black.

Change-Id: Id965a243ebf42ad249e63e9ad6f4fb22e39c3876
---
 gnu/packages/virtualization.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index f366388623..1bfa31b7d3 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -2777,7 +2777,7 @@ (define-public python-transient
            python-requests
            python-toml))
     (native-inputs
-     (list python-black python-mypy python-pyhamcrest python-twine))
+     (list python-mypy python-pyhamcrest python-twine))
     (home-page "https://github.com/ALSchwalm/transient")
     (synopsis "QEMU Wrapper written in Python")
     (description
-- 
2.41.0

[bug#70736] [PATCH 002/714] gnu: python-ovh: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-ovh):
  [native-inputs]: Remove python-black.

Change-Id: I62a0ac9c37a72ab5e7e979001bb347c2c75a8be9
---
 gnu/packages/python-web.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index bd9c50a006..3fccdcdf59 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -974,8 +974,7 @@ (define-public python-ovh
     (build-system pyproject-build-system)
     (arguments (list #:tests? #f))      ; XXX: tests require networking
     (propagated-inputs (list python-requests))
-    (native-inputs (list python-black
-                         python-coverage
+    (native-inputs (list python-coverage
                          python-flake8
                          python-isort
                          python-pytest
-- 
2.41.0

[bug#70737] [PATCH 003/714] gnu: python-funsor: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-funsor):
  [native-inputs]: Remove python-black.

Change-Id: I2049ce0c0701f91a883646d40bd985f8a7bda7d9
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index e11a851105..62fe0d9980 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -173,8 +173,7 @@ (define-public python-funsor
     (propagated-inputs (list python-makefun python-multipledispatch
                              python-numpy python-opt-einsum
                              python-typing-extensions))
-    (native-inputs (list python-black
-                         python-flake8
+    (native-inputs (list python-flake8
                          python-isort
                          python-nbsphinx
                          python-pandas
-- 
2.41.0

[bug#70738] [PATCH 004/714] gnu: python-imbalanced-learn: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-imbalanced-learn):
  [native-inputs]: Remove python-black.

Change-Id: I238b32a50b8a025466108e1c836bac7c6e06a3fb
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 62fe0d9980..cec9b63f17 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1904,8 +1904,7 @@ (define-public python-imbalanced-learn
                               (getcwd)))))))
     (propagated-inputs (list python-joblib python-numpy python-scikit-learn
                              python-scipy python-threadpoolctl))
-    (native-inputs (list python-black
-                         python-flake8
+    (native-inputs (list python-flake8
                          python-keras
                          python-mypy
                          python-numpydoc
-- 
2.41.0

[bug#70740] [PATCH 005/714] gnu: python-hyperopt: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-hyperopt):
  [native-inputs]: Remove python-black.

Change-Id: I141e46fba9481df7bbb0d06e64de0cba0723fdc0
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index cec9b63f17..f316f4bbf1 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -2332,8 +2332,7 @@ (define-public python-hyperopt
            python-six
            python-tqdm))
     (native-inputs
-     (list python-black
-           python-nose
+     (list python-nose
            python-pymongo
            python-pytest
            python-wheel))
-- 
2.41.0

[bug#70741] [PATCH 006/714] gnu: python-captum: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-captum):
  [native-inputs]: Remove python-black.

Change-Id: Ifb7195e0b20763a4c3362b5b8fe74af1b91c0360
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index f316f4bbf1..fdeb7ab377 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -4528,7 +4528,6 @@ (define-public python-captum
      (list python-matplotlib python-numpy python-pytorch python-tqdm))
     (native-inputs (list jupyter
                          python-annoy
-                         python-black
                          python-flake8
                          python-flask
                          python-flask-compress
-- 
2.41.0

[bug#70742] [PATCH 007/714] gnu: python-pyro-ppl: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-pyro-ppl):
  [native-inputs]: Remove python-black.

Change-Id: Ib8f8da2faf4354ca52e0dbc44aa92b4854ec14d0
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index fdeb7ab377..3d93b029da 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5065,7 +5065,6 @@ (define-public python-pyro-ppl
     (native-inputs
      (list ninja
            jupyter
-           python-black
            python-flake8
            python-graphviz
            python-isort
-- 
2.41.0

[bug#70743] [PATCH 008/714] gnu: python-trezor: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/finance.scm (python-trezor):
  [native-inputs]: Remove python-black.

Change-Id: Ic70295eb8302a6ac449dd87479b8b4bbeb60b38f
---
 gnu/packages/finance.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index 8703120f2a..707342dbe2 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -1149,7 +1149,6 @@ (define-public python-trezor
            python-typing-extensions))
     (native-inputs ; Only needed for running the tests
      (list protobuf
-           python-black
            python-isort
            python-pillow
            python-protobuf
-- 
2.41.0

[bug#70747] [PATCH 009/714] gnu: python-openai: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-openai):
  [native-inputs]: Remove python-black.

Change-Id: Ie1d7f9fd55b35f9a5a514a318bd09338caa67a09
---
 gnu/packages/python-web.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 3fccdcdf59..cfd3755868 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -2152,7 +2152,7 @@ (define-public python-openai
  and not test_file_cli")))
     (propagated-inputs (list python-aiohttp python-requests python-tqdm
                              python-typing-extensions))
-    (native-inputs (list python-black python-pytest python-pytest-asyncio
+    (native-inputs (list python-pytest python-pytest-asyncio
                          python-pytest-mock python-setuptools python-wheel))
     (home-page "https://github.com/openai/openai-python")
     (synopsis "Python client library for the OpenAI API")
-- 
2.41.0

[bug#70744] [PATCH 010/714] gnu: python-starsessions-for-pytorch-lightning: Remove python-black.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-starsessions-for-pytorch-lightning):
  [native-inputs]: Remove python-black.

Change-Id: Id74da2f987ba02fd9c778fbcf9be7598c9367698
---
 gnu/packages/python-web.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index cfd3755868..3ae90c9360 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8932,8 +8932,7 @@ (define-public python-starsessions-for-pytorch-lightning
            python-itsdangerous
            python-starlette-for-fastapi-0.88))
     (native-inputs
-     (list python-black
-           python-flake8
+     (list python-flake8
            python-httpx
            python-mypy
            python-poetry-core
-- 
2.41.0

[bug#70745] [PATCH 011/714] gnu: python-graphtools: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/graph.scm (python-graphtools):
  [native-inputs]: Remove python-black.

Change-Id: Ia82aa4e2219da9242376c119b1fb71c6716f2e84
---
 gnu/packages/graph.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 1d98541a04..6839fc04db 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -467,7 +467,6 @@ (define-public python-graphtools
     (native-inputs
      (list util-linux ;for lscpu
            python-anndata
-           python-black
            python-coverage
            python-coveralls
            python-nose
-- 
2.41.0

[bug#70746] [PATCH 012/714] gnu: python-jupytext: Improve package style.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-jupytext): Improve package
style.
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:test-flags>: Add flags.
             <#:phases>: Remove 'check phase replacement.

Change-Id: I5d708c2fc76b609105c1551a6ed1755c56efcada
---
 gnu/packages/python-xyz.scm | 25 ++++++++++++-------------
 1 file changed, 12 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6338750d0b..51273ca91a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -404,26 +404,25 @@ (define-public python-jupytext
        (file-name (git-file-name name version))
        (sha256
         (base32 "0bgf0c4py22ip7qfla8mrmypfh3bg151c8awsr1gvcbw7m4ni01k"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags
+      '(list "-k" (string-append
+                   "not "
+                   (string-join
+                    (list "test_create_header_with_set_formats"
+                          "test_pre_commit_hook"
+                          "test_sync_with_pre_commit_hook")
+                    " and not ")))
       #:phases
       #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
+          (add-before 'check 'pre-check
+            (lambda _
               ;; some tests fail when HOME=/homeless-shelter.
               (setenv "HOME" "/tmp")
               ;; OSError: [Errno 18] Invalid cross-device link
-              (setenv "TMPDIR" "/tmp")
-              (when tests?
-                (let ((disabled-tests
-                       (list "test_create_header_with_set_formats"
-                             "test_pre_commit_hook"
-                             "test_sync_with_pre_commit_hook")))
-                  (invoke "pytest" "-vv" "-k"
-                          (string-append "not "
-                                         (string-join disabled-tests
-                                                      " and not "))))))))))
+              (setenv "TMPDIR" "/tmp"))))))
     (native-inputs
      (list git-minimal
            python-autopep8
-- 
2.41.0

[bug#70748] [PATCH 013/714] gnu: python-pydantic-cli: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-pydantic-cli):
  [native-inputs]: Remove python-black.

Change-Id: I11431925d2c3a226a399c0ec8a0f1f013df6062c
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 51273ca91a..a3a3e9cf82 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -7755,8 +7755,7 @@ (define-public python-pydantic-cli
     (propagated-inputs
      (list python-pydantic))
     (native-inputs
-     (list python-black
-           python-mypy
+     (list python-mypy
            python-pytest))
     (home-page "https://github.com/mpkocher/pydantic-cli")
     (synopsis "Turn Pydantic defined data models into CLI tools")
-- 
2.41.0

[bug#70749] [PATCH 014/714] gnu: python-imageio: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-imageio):
  [native-inputs]: Remove python-black.

Change-Id: I4ed34784b5230b06b81d5fba2ec984cf7913f7e4
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a3a3e9cf82..2c81cd2d51 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -10448,7 +10448,7 @@ (define-public python-imageio
     (propagated-inputs
      (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile python-setuptools))
     (native-inputs
-     (list python-black python-flake8 python-fsspec python-pytest
+     (list python-flake8 python-fsspec python-pytest
            python-pytest-cov python-wheel))
     (home-page "https://imageio.github.io/")
     (synopsis "Library for reading and writing a wide range of image data")
-- 
2.41.0

[bug#70750] [PATCH 015/714] gnu: python-isort: Improve package style.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-isort): Improve package style.
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:test-flags>: Add option to replace former check phase.
  <#:phases>: Remove phases build, install and check.

Change-Id: Idac8f151977f2494eb44d51aa1fcbf3156b5cc87
---
 gnu/packages/python-xyz.scm | 22 ++++------------------
 1 file changed, 4 insertions(+), 18 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2c81cd2d51..8be0040220 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -23654,19 +23654,13 @@ (define-public python-isort
        (sha256
         (base32
          "1vbwc4gpffclf6hw08lvvgqlvsgfjlw7gjsm28jfcrln2pixla7j"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags '(list "tests/unit/" "-k" "not test_gitignore"
+                          "--ignore=tests/unit/test_deprecated_finders.py")
       #:phases
       #~(modify-phases %standard-phases
-          (replace 'build
-            (lambda _
-              (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
-          (replace 'install
-            (lambda _
-              (let ((whl (car (find-files "dist" "\\.whl$"))))
-                (invoke "pip" "--no-cache-dir" "--no-input"
-                        "install" "--no-deps" "--prefix" #$output whl))))
           (add-after 'install 'install-example-plugins
             (lambda _
               (for-each (lambda (source-directory)
@@ -23680,15 +23674,7 @@ (define-public python-isort
               (setenv "HOME" (getcwd))
               (let ((example-whls (find-files "dist" "^example.*\\.whl$")))
                 (apply invoke "pip" "--no-cache-dir" "--no-input"
-                       "install"  "--user" "--no-deps" example-whls))))
-          (replace 'check
-            (lambda* (#:key tests? inputs outputs #:allow-other-keys)
-              (when tests?
-                (let ((bin (string-append #$output "/bin")))
-                  (setenv "PATH" (string-append (getenv "PATH") ":" bin)))
-                (invoke "pytest" "-vv" "tests/unit/"
-                        "-k" "not test_gitignore" ;requires git
-                        "--ignore=tests/unit/test_deprecated_finders.py")))))))
+                       "install"  "--user" "--no-deps" example-whls)))))))
     (native-inputs
      (list python-black
            python-colorama
-- 
2.41.0

[bug#70751] [PATCH 016/714] gnu: python-imageio: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-imageio):
  [native-inputs]: Remove python-black.

Change-Id: Ie868334f0c93f11449122cf6c213c5fbb08d1255
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 8be0040220..1433ddaff9 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -10448,7 +10448,7 @@ (define-public python-imageio
     (propagated-inputs
      (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile python-setuptools))
     (native-inputs
-     (list python-flake8 python-fsspec python-pytest
+     (list python-fsspec python-pytest
            python-pytest-cov python-wheel))
     (home-page "https://imageio.github.io/")
     (synopsis "Library for reading and writing a wide range of image data")
-- 
2.41.0

[bug#70753] [PATCH 017/714] gnu: python-minikanren: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-minikanren):
  [native-inputs]: Remove python-black.

Change-Id: I9e5f55fbf43d34435a983f6791ffabea9f284dd8
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 1433ddaff9..f3f88b1110 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -33393,7 +33393,6 @@ (define-public python-minikanren
            python-pytest
            python-pytest-cov
            python-pylint
-           python-black
            python-sympy
            python-versioneer
            python-coverage))
-- 
2.41.0

[bug#70754] [PATCH 018/714] gnu: python-eliot: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-eliot):
  [native-inputs]: Remove python-black.

Change-Id: I0559d1164f1b3c613550002b062c8a9e082481a0
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f3f88b1110..2cb851fa36 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -30714,8 +30714,7 @@ (define-public python-eliot
      (list python-boltons python-pyrsistent python-six
            python-zope-interface))
     (native-inputs
-     (list python-black
-           python-coverage
+     (list python-coverage
            python-dask
            python-flake8
            python-hypothesis
-- 
2.41.0

[bug#70755] [PATCH 019/714] gnu: python-update-checker: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-update-checker):
  [native-inputs]: Remove python-black.

Change-Id: I44b950199c325a836f87cae498902d338548cc28
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2cb851fa36..a8979dfdc0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -26741,7 +26741,7 @@ (define-public python-update-checker
         (base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba"))))
     (build-system python-build-system)
     (propagated-inputs (list python-requests))
-    (native-inputs (list python-black python-flake8 python-pytest))
+    (native-inputs (list python-flake8 python-pytest))
     (home-page "https://github.com/bboe/update_checker")
     (synopsis "Python module that will check for package updates")
     (description "This package provides a Python module that will check for
-- 
2.41.0

[bug#70756] [PATCH 020/714] gnu: python-doubletdetection: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-doubletdetection):
  [native-inputs]: Remove python-black.

Change-Id: I3c97789ea573dc62ae487908b8826f5d5f2c5217
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c93eaeba2f..1489b6c6fb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2051,8 +2051,7 @@ (define-public python-doubletdetection
            python-scipy
            python-tqdm))
     (native-inputs
-     (list python-black
-           python-flake8
+     (list python-flake8
            python-poetry-core
            python-pytest))
     (home-page "https://github.com/JonathanShor/DoubletDetection")
-- 
2.41.0

[bug#70757] [PATCH 021/714] gnu: python-liana-py: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-liana-py):
  [native-inputs]: Remove python-black.

Change-Id: I69f3d751318e2c3b9c4986d1ca1ea08716f2bb0b
---
 gnu/packages/bioinformatics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1489b6c6fb..1bcb803a03 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2157,7 +2157,7 @@ (define-public python-liana-py
                              python-tqdm
                              tzdata))
     (native-inputs
-     (list python-black python-pytest python-pytest-cov python-numpy))
+     (list python-pytest python-pytest-cov python-numpy))
     (home-page "https://github.com/saezlab/liana-py")
     (synopsis "LIANA is a ligand-receptor analysis framework")
     (description "This is a Ligand-Receptor inference framework.  The
-- 
2.41.0

[bug#70758] [PATCH 022/714] gnu: scvelo: Remove python-black native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (scvelo):
  [native-inputs]: Remove python-black.

Change-Id: I61023231e6c38ffaa1048c42283730eec7f390ba
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1bcb803a03..5ffce8c453 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21546,8 +21546,7 @@ (define-public scvelo
            python-umap-learn
            pybind11))
     (native-inputs
-     (list python-black
-           python-flake8
+     (list python-flake8
            python-hypothesis
            python-pytest
            python-setuptools-scm
-- 
2.41.0

[bug#70739] [PATCH 023/714] gnu: python-black: Improve package style.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-black): Improve package style.
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:phases>: Improve style of use-absolute-file-names
  phase. Remove phase check.

Change-Id: If2da4b3b0fea4928d1aeb270fbaa4167f20a6ee5
---
 gnu/packages/python-xyz.scm | 18 ++++++------------
 1 file changed, 6 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a8979dfdc0..d4381ae4d2 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -7965,22 +7965,16 @@ (define-public python-black
        (sha256
         (base32
          "0yfahlqc7dsdp1js0cbv706apldnfnlbal9b53cww8n0hs40n0im"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      `(#:phases
        (modify-phases %standard-phases
          (add-after 'patch-source-shebangs 'use-absolute-file-names
-           (lambda* (#:key native-inputs inputs #:allow-other-keys)
-             (let* ((inpts (or native-inputs inputs))
-                    (python3 (search-input-file inpts "/bin/python3")))
-               (substitute* (find-files "tests" "\\.py$")
-                 (("#!/usr/bin/env python3(\\.[0-9]+)?" _ minor-version)
-                  (string-append "#!" python3 (if (string? minor-version)
-                                                  minor-version
-                                                  "")))))))
-         (replace 'check
-           (lambda* (#:key tests? #:allow-other-keys)
-             (when tests? (invoke "pytest" "-vv")))))))
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* (find-files "tests" "\\.py$")
+               (("#!/usr/bin/env python3")
+                (string-append
+                 "#!" (search-input-file inputs "/bin/python3")))))))))
     (propagated-inputs
      (list python-click
            python-attrs
-- 
2.41.0

[bug#70739] [PATCH 024/714] gnu: calibre: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/ebook.scm (calibre):
  [native-inputs]: Remove python-flake8.

Change-Id: I8cf61903ade3e753bb051edc74e3d034015323bf
---
 gnu/packages/ebook.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/ebook.scm b/gnu/packages/ebook.scm
index 16d4fcd6e3..3d536e59ad 100644
--- a/gnu/packages/ebook.scm
+++ b/gnu/packages/ebook.scm
@@ -154,7 +154,6 @@ (define-public calibre
     (native-inputs
      (list bash-minimal
            pkg-config
-           python-flake8
            python-pyqt-builder
            qtbase-5                     ; for qmake
            xdg-utils))
-- 
2.41.0

[bug#70739] [PATCH 025/714] gnu: mdpo: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/gettext.scm (mdpo):
  [native-inputs]: Remove python-flake8.

Change-Id: Id6083591aaa63f9fbc71ec6e17bf74421f942cb4
---
 gnu/packages/gettext.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/gettext.scm b/gnu/packages/gettext.scm
index 1408cc4cb4..bbb19bd4cb 100644
--- a/gnu/packages/gettext.scm
+++ b/gnu/packages/gettext.scm
@@ -214,7 +214,6 @@ (define-public mdpo
     (build-system python-build-system)
     (native-inputs
      (list python-bump2version
-           python-flake8
            python-flake8-implicit-str-concat
            python-flake8-print
            python-isort
-- 
2.41.0

[bug#70739] [PATCH 026/714] gnu: python-apprise: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-apprise):
  [native-inputs]: Remove python-flake8.

Change-Id: Ibbca97916ab4dab43bbc868d3a70fa50338dd1b6
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index d4381ae4d2..bd4f8d5254 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -318,7 +318,6 @@ (define-public python-apprise
     (native-inputs (list python-babel
                          python-coverage
                          python-cryptography
-                         python-flake8
                          python-paho-mqtt
                          python-pytest
                          python-pytest-cov
-- 
2.41.0

[bug#70739] [PATCH 027/714] gnu: python-colorful: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-colorful):
  [native-inputs]: Remove python-flake8.

Change-Id: Idf06bfd24676a4e3afec109420e65bde22000048
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index bd4f8d5254..5b6ccf32cd 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1072,8 +1072,7 @@ (define-public python-colorful
         (base32 "0kyy9qhvrb5m9h8xmri7c88i0k1g5qc7017anw39gx44an7mn33y"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-coverage python-flake8 python-pytest python-setuptools
-           python-wheel))
+     (list python-coverage python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-colorama))
     (home-page "http://github.com/timofurrer/colorful")
-- 
2.41.0

[bug#70739] [PATCH 028/714] gnu: python-pymd4c: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-pymd4c):
  [native-inputs]: Remove python-flake8.

Change-Id: Ic7e777d8518a6888a6df5da193d107d1ed4c601e
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5b6ccf32cd..cbb8f4f97c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2200,7 +2200,7 @@ (define-public python-pymd4c
     (inputs
      (list md4c))
     (native-inputs
-     (list python-flake8 python-pkgconfig pkg-config))
+     (list python-pkgconfig pkg-config))
     (home-page "https://github.com/dominickpastore/pymd4c")
     (synopsis "Python bindings for MD4C")
     (description
-- 
2.41.0

[bug#70739] [PATCH 029/714] gnu: python-pyls-black: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-pyls-black):
  [native-inputs]: Remove python-flake8.

Change-Id: Ifefa7600048cb08a93557c6389254c6fa89b24c2
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index cbb8f4f97c..cf76979679 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2858,7 +2858,7 @@ (define-public python-pyls-black
     (propagated-inputs
      (list python-black python-lsp-server python-tomli))
     (native-inputs
-     (list python-flake8 python-isort python-mypy python-pytest
+     (list python-isort python-mypy python-pytest
            python-pytest-runner python-setuptools python-wheel))
     (home-page "https://github.com/rupert/pyls-black")
     (synopsis "Black plugin for the Python Language Server")
-- 
2.41.0

[bug#70739] [PATCH 030/714] gnu: python-pypugjs: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-pypugjs):
  [native-inputs]: Remove python-flake8.

Change-Id: I2847b721968ecffa7c9caff60555ca6c6aae3b30
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index cf76979679..697dda5a1a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -6201,7 +6201,6 @@ (define-public python-pypugjs
     (native-inputs (list python-coverage
                          python-django
                          python-jinja2
-                         python-flake8
                          python-flask
                          python-mako
                          python-nose
-- 
2.41.0

[bug#70739] [PATCH 031/714] gnu: python-docx: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-docx):
  [native-inputs]: Remove python-flake8.

Change-Id: Id4d260ba5b567dd6450dbefa8fe67ad8f41981cb
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 697dda5a1a..4244860141 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -6742,7 +6742,6 @@ (define-public python-docx
     (build-system pyproject-build-system)
     (native-inputs
      (list behave
-           python-flake8
            python-mock
            python-pyparsing
            python-pytest
-- 
2.41.0

[bug#70739] [PATCH 032/714] gnu: python-importlib-resources: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-importlib-resources):
  [native-inputs]: Remove python-flake8.

Change-Id: I9f781c7ae87b27ef2f1cb9c1d963e763ec68f602
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 4244860141..041baa2272 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11248,8 +11248,7 @@ (define-public python-importlib-resources
              (setenv "PYTHONPATH"
                      (string-append (getcwd) "/_custom_build")))))))
     (native-inputs
-     (list python-flake8
-           python-pytest
+     (list python-pytest
            python-pytest-black
            python-pytest-checkdocs
            python-pytest-cov
-- 
2.41.0

[bug#70739] [PATCH 033/714] gnu: python-jaraco-test: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-jaraco-test):
  [native-inputs]: Remove python-flake8.

Change-Id: I8f020571913c84016729db9504f9aee42b5cdf26
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 041baa2272..46971528bc 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11616,8 +11616,7 @@ (define-public python-jaraco-test
                      (lambda _
                        (invoke "pytest" "-vv" "-k" "http"))))))
     (propagated-inputs (list python-jaraco-context python-jaraco-functools))
-    (native-inputs (list python-flake8
-                         python-pytest
+    (native-inputs (list python-pytest
                          python-pytest-black
                          python-pytest-checkdocs
                          python-pytest-cov
-- 
2.41.0

[bug#70739] [PATCH 034/714] gnu: python-seaborn: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-seaborn):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia3a3ccd36bff7ef10d16b56e58c7208f55332918
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 46971528bc..c6a537175c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -13340,8 +13340,7 @@ (define-public python-seaborn
            python-scipy
            python-statsmodels))
     (native-inputs
-     (list python-flake8
-           python-flit-core
+     (list python-flit-core
            python-ipykernel
            python-nbconvert
            python-numpydoc
-- 
2.41.0

[bug#70739] [PATCH 035/714] gnu: python-progressbar2: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-progressbar2):
  [native-inputs]: Remove python-flake8.

Change-Id: I1c00129eca86fef019810bac2a59d229790cfdce
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c6a537175c..7f2d56ac15 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -18243,8 +18243,7 @@ (define-public python-progressbar2
     (propagated-inputs
      (list python-six python-utils))
     (native-inputs
-     (list python-flake8
-           python-freezegun
+     (list python-freezegun
            python-pycodestyle
            python-pytest
            python-pytest-cache
-- 
2.41.0

[bug#70739] [PATCH 036/714] gnu: python-codespell: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-codespell):
  [arguments]: Remove uneeded field.
  [native-inputs]: Remove python-flake8.

Change-Id: I1ca51f5320527300a556e64c59c6c2c9d5230f23
---
 gnu/packages/python-xyz.scm | 14 +-------------
 1 file changed, 1 insertion(+), 13 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7f2d56ac15..4519b8468f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -19589,25 +19589,13 @@ (define-public python-codespell
     (inputs
       (list python-chardet))
     (native-inputs
-      (list python-flake8
-            python-pygments
+      (list python-pygments
             python-pytest
             python-pytest-cov
             python-pytest-dependency
             python-tomli
             python-setuptools
             python-wheel))
-    (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (replace 'check
-           (lambda* (#:key outputs tests? #:allow-other-keys)
-             (when tests?
-               ;; Make installed executable available for running the tests.
-               (setenv "PATH"
-                       (string-append (assoc-ref outputs "out") "/bin"
-                                      ":" (getenv "PATH")))
-               (invoke "pytest" "-vv")))))))
     (home-page "https://github.com/codespell-project/codespell/")
     (synopsis "Spellchecker for code")
     (description "Codespell fixes common misspellings in text files.
-- 
2.41.0

[bug#70739] [PATCH 037/714] gnu: python-inflect: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-inflect):
  [native-inputs]: Remove python-flake8.

Change-Id: Iff087e1ebb634f6cb99a00240f99a739ac8d0a9e
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 4519b8468f..48d68c075f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -20669,8 +20669,7 @@ (define-public python-inflect
              (setenv "PYTHONPATH"
                      (string-append (getcwd) "/_custom_build")))))))
     (propagated-inputs (list python-pydantic))
-    (native-inputs (list python-flake8
-                         python-pygments
+    (native-inputs (list python-pygments
                          python-pytest
                          python-pytest-black
                          python-pytest-checkdocs
-- 
2.41.0

[bug#70739] [PATCH 038/714] gnu: python-argcomplete: Remove python-mypy native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-argcomplete):
  [native-inputs]: Remove python-mypy.

Change-Id: Ie8dec41c6355f5ea2d41d5ca3902408006daf56c
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 48d68c075f..2583692e34 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -22757,7 +22757,6 @@ (define-public python-argcomplete
                (invoke "python3" "./test/test.py" "-v")))))))
     (native-inputs
      (list python-coverage
-           python-mypy
            python-pexpect
            python-setuptools
            python-setuptools-scm
-- 
2.41.0

[bug#70739] [PATCH 039/714] gnu: python-diff-cover: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-diff-cover):
  [native-inputs]: Remove python-flake8.

Change-Id: Ib4abb69410a3de90997ea7113965818c765a4ce0
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2583692e34..efa49a632c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -23864,8 +23864,7 @@ (define-public python-diff-cover
            python-setuptools ; For pkg_resources.
            python-tomli))
     (native-inputs
-     (list python-flake8
-           python-poetry-core
+     (list python-poetry-core
            python-pylint
            python-pytest
            python-pytest-flake8
-- 
2.41.0

[bug#70739] [PATCH 040/714] gnu: python-validators: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-validators):
  [native-inputs]: Remove python-flake8.

Change-Id: I740b0a63041ed2c453f2701cbf7de0eb997c7a5a
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index efa49a632c..2ac5a37dae 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24506,7 +24506,7 @@ (define-public python-validators
     (propagated-inputs
      (list python-decorator python-six))
     (native-inputs
-     (list python-flake8 python-isort python-pytest))
+     (list python-isort python-pytest))
     (home-page "https://github.com/kvesteri/validators")
     (synopsis "Data validation library")
     (description
-- 
2.41.0

[bug#70739] [PATCH 041/714] gnu: python-marshmallow: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-marshmallow):
  [native-inputs]: Remove python-flake8.

Change-Id: I4938c32b24975093322177ed224feddd5413299e
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2ac5a37dae..963f7cf127 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24575,8 +24575,7 @@ (define-public python-marshmallow
     (propagated-inputs
      (list python-packaging))
     (native-inputs
-     (list python-flake8
-           python-flake8-bugbear
+     (list python-flake8-bugbear
            python-mypy
            python-pytest
            python-pytz
-- 
2.41.0

[bug#70739] [PATCH 042/714] gnu: python-marshmallow-jsonapi: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-marshmallow-jsonapi):
  [native-inputs]: Remove python-flake8.

Change-Id: I6caf0b6f875c74af727629a463715fba480e2b3e
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 963f7cf127..3ec7f433ce 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24603,7 +24603,6 @@ (define-public python-marshmallow-jsonapi
      (list python-marshmallow))
     (native-inputs
      (list python-faker
-           python-flake8
            python-flake8-bugbear
            python-flask
            python-mock
-- 
2.41.0

[bug#70739] [PATCH 043/714] gnu: python-crds: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/astronomy.scm (python-crds):
  [native-inputs]: Remove python-flake8.

Change-Id: I01397ce66d7916d37a521fc6f91b118040c697ce
---
 gnu/packages/astronomy.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5bb8f858e6..3eb847e159 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2119,8 +2119,7 @@ (define-public python-crds
                              python-roman-datamodels
                              python-stsynphot
                              python-requests))
-    (native-inputs (list python-flake8
-                         python-ipython
+    (native-inputs (list python-ipython
                          python-lockfile
                          python-mock
                          python-nose
-- 
2.41.0

[bug#70739] [PATCH 044/714] gnu: python-doubletdetection: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-doubletdetection):
  [native-inputs]: Remove python-flake8.

Change-Id: Ifc842c4deb83fecec5b981fd5b9f3d2ee1056ef6
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5ffce8c453..7ed6cc06b6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2051,8 +2051,7 @@ (define-public python-doubletdetection
            python-scipy
            python-tqdm))
     (native-inputs
-     (list python-flake8
-           python-poetry-core
+     (list python-poetry-core
            python-pytest))
     (home-page "https://github.com/JonathanShor/DoubletDetection")
     (synopsis
-- 
2.41.0

[bug#70739] [PATCH 045/714] gnu: python-biom-format: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-biom-format):
  [native-inputs]: Remove python-flake8.

Change-Id: Iff59c5a55e678c814d6b92cc6bfc64425125c377
---
 gnu/packages/bioinformatics.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7ed6cc06b6..e7b6c14771 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2783,7 +2783,6 @@ (define-public python-biom-format
     (propagated-inputs
      (list python-anndata
            python-click
-           python-flake8
            python-future
            python-h5py
            python-numpy
-- 
2.41.0

[bug#70739] [PATCH 046/714] gnu: scvelo: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (scvelo):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia6a10051e10a6cf5e1da3e83fea810d2a15001b3
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e7b6c14771..9019ca8bab 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21544,8 +21544,7 @@ (define-public scvelo
            python-umap-learn
            pybind11))
     (native-inputs
-     (list python-flake8
-           python-hypothesis
+     (list python-hypothesis
            python-pytest
            python-setuptools-scm
            python-wheel))
-- 
2.41.0

[bug#70739] [PATCH 047/714] gnu: python-docker-pycreds: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/docker.scm (python-docker-pycreds):
  [native-inputs]: Remove python-flake8.

Change-Id: I98966a387f433b47698ffa8c8dec952b354dbd7a
---
 gnu/packages/docker.scm | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/docker.scm b/gnu/packages/docker.scm
index b18de182fe..adeff26af4 100644
--- a/gnu/packages/docker.scm
+++ b/gnu/packages/docker.scm
@@ -159,11 +159,9 @@ (define-public python-docker-pycreds
            (lambda _
              (substitute* "test-requirements.txt"
                (("3.0.2") ,(package-version python-pytest))
-               (("2.3.1") ,(package-version python-pytest-cov))
-               (("2.4.1") ,(package-version python-flake8)))
-             #t)))))
+               (("2.3.1") ,(package-version python-pytest-cov))))))))
     (native-inputs
-     (list python-flake8 python-pytest python-pytest-cov))
+     (list python-pytest python-pytest-cov))
     (propagated-inputs
      (list python-six))
     (home-page "https://github.com/shin-/dockerpy-creds")
-- 
2.41.0

[bug#70739] [PATCH 048/714] gnu: python-scikit-rf: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/engineering.scm (python-scikit-rf):
  [native-inputs]: Remove python-flake8.

Change-Id: I2696758390b686370196f69012a56a937908c49d
---
 gnu/packages/engineering.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 0a562b0158..d7fb51fc8b 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -2674,7 +2674,6 @@ (define-public python-scikit-rf
                              python-qtpy
                              python-scipy))
     (native-inputs (list python-coverage
-                         python-flake8
                          python-nbval
                          python-networkx
                          python-pytest
-- 
2.41.0

[bug#70739] [PATCH 049/714] gnu: python-mt-940: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/finance.scm (python-mt-940):
  [native-inputs]: Remove python-flake8.

Change-Id: I8ef4c9c2400e921e15abdc290efedbfd3a8f1017
---
 gnu/packages/finance.scm | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index 707342dbe2..db8209c5c8 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -2307,9 +2307,7 @@ (define-public python-mt-940
                         ;; Remove custom --cov flags.
                         (delete-file "pytest.ini")
                         (invoke "pytest" "-vv")))))))
-    (native-inputs (list python-flake8
-                         python-pytest
-                         python-pyyaml))
+    (native-inputs (list python-pytest python-pyyaml))
     (home-page "https://mt940.readthedocs.io/")
     (synopsis "Python parser for MT940-encoded SWIFT data")
     (description
-- 
2.41.0

[bug#70739] [PATCH 050/714] gnu: python-geopy: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/geo.scm (python-geopy):
  [native-inputs]: Remove python-flake8.

Change-Id: Ic534a7c209a465b3578c832873299760d6689862
---
 gnu/packages/geo.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index c89bd62128..48d83532fc 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -3154,7 +3154,6 @@ (define-public python-geopy
     (native-inputs
      (list python-async-generator
            python-coverage
-           python-flake8
            python-isort
            python-pytest
            python-pytest-aiohttp
-- 
2.41.0

[bug#70739] [PATCH 051/714] gnu: python-pygsp: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/graph.scm (python-pygsp):
  [native-inputs]: Remove python-flake8.

Change-Id: I94434121785eadff036d93061fdf07cb96b4ae3a
---
 gnu/packages/graph.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 6839fc04db..708977eb5a 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -554,7 +554,7 @@ (define-public python-pygsp
                (("suites.append\\(test_docstrings.*")
                 "")))))))
     (propagated-inputs (list python-numpy python-scikit-image python-scipy))
-    (native-inputs (list python-coverage python-coveralls python-flake8))
+    (native-inputs (list python-coverage python-coveralls))
     (home-page "https://github.com/epfl-lts2/pygsp")
     (synopsis "Graph Signal Processing in Python")
     (description "The PyGSP is a Python package to ease signal processing on
-- 
2.41.0

[bug#70739] [PATCH 052/714] gnu: python-uqbar: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/graphviz.scm (python-uqbar):
  [native-inputs]: Remove python-flake8.

Change-Id: If4bb2b2634e5f417794bd396f10e4bd93a602e8b
---
 gnu/packages/graphviz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index a0ea646193..777ba36346 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -220,7 +220,6 @@ (define-public python-uqbar
              #t)))))
     (native-inputs
      (list graphviz
-           python-flake8
            python-isort
            python-mypy
            python-pytest
-- 
2.41.0

[bug#70739] [PATCH 053/714] gnu: python-funsor: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-funsor):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia97f4628ca67de437ce1c2b55e3d751ef578df15
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 3d93b029da..9abaf56010 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -173,8 +173,7 @@ (define-public python-funsor
     (propagated-inputs (list python-makefun python-multipledispatch
                              python-numpy python-opt-einsum
                              python-typing-extensions))
-    (native-inputs (list python-flake8
-                         python-isort
+    (native-inputs (list python-isort
                          python-nbsphinx
                          python-pandas
                          python-pillow
-- 
2.41.0

[bug#70739] [PATCH 054/714] gnu: python-imbalanced-learn: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-imbalanced-learn):
  [native-inputs]: Remove python-flake8.

Change-Id: I5a598d53238d9c01606ac5527ebedbf3df77e56c
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 9abaf56010..c87e29be12 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1903,8 +1903,7 @@ (define-public python-imbalanced-learn
                               (getcwd)))))))
     (propagated-inputs (list python-joblib python-numpy python-scikit-learn
                              python-scipy python-threadpoolctl))
-    (native-inputs (list python-flake8
-                         python-keras
+    (native-inputs (list python-keras
                          python-mypy
                          python-numpydoc
                          python-pandas
-- 
2.41.0

[bug#70739] [PATCH 055/714] gnu: python-captum: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-captum):
  [native-inputs]: Remove python-flake8.

Change-Id: I46900f5d4dbabd37f24a6b82a9fefc54b6590581
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index c87e29be12..78b69ca3f2 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -4526,7 +4526,6 @@ (define-public python-captum
      (list python-matplotlib python-numpy python-pytorch python-tqdm))
     (native-inputs (list jupyter
                          python-annoy
-                         python-flake8
                          python-flask
                          python-flask-compress
                          python-ipython
-- 
2.41.0

[bug#70739] [PATCH 056/714] gnu: python-pyro-api: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-pyro-api):
  [native-inputs]: Remove python-flake8.

Change-Id: Idf00623f0b6029a5bde8636eaed45c47d81d57ae
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 78b69ca3f2..9b5aa07abc 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5012,8 +5012,7 @@ (define-public python-pyro-api
     (build-system python-build-system)
     (arguments '(#:tests? #false)) ;requires pyro
     (native-inputs
-     (list python-flake8
-           python-ipython
+     (list python-ipython
            python-pytest
            python-sphinx
            python-sphinx-rtd-theme))
-- 
2.41.0

[bug#70739] [PATCH 057/714] gnu: python-pyro-ppl: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-pyro-ppl):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia59826acaa25e0f92679e24c8f4d8728b791bab6
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 9b5aa07abc..688d902500 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5061,7 +5061,6 @@ (define-public python-pyro-ppl
     (native-inputs
      (list ninja
            jupyter
-           python-flake8
            python-graphviz
            python-isort
            python-lap
-- 
2.41.0

[bug#70739] [PATCH 058/714] gnu: python-linear-operator: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-linear-operator):
  [native-inputs]: Remove python-flake8.

Change-Id: Ica64069c1b2128047bd2d2b93301d6fd5e108ead
---
 gnu/packages/machine-learning.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 688d902500..5c67db26cf 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5107,8 +5107,7 @@ (define-public python-linear-operator
                              python-pytorch
                              python-scipy
                              python-typeguard))
-    (native-inputs (list python-flake8
-                         python-flake8-print
+    (native-inputs (list python-flake8-print
                          python-pytest
                          python-setuptools-scm
                          python-twine))
-- 
2.41.0

[bug#70739] [PATCH 059/714] gnu: python-gpytorch: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/machine-learning.scm (python-gpytorch):
  [native-inputs]: Remove python-flake8.

Change-Id: I5ace15ffdbe533585b0a604347e195c9f864b15e
---
 gnu/packages/machine-learning.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 5c67db26cf..46683521f5 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -5137,7 +5137,6 @@ (define-public python-gpytorch
                                        " and not test_t_matmul_matrix"))))
     (propagated-inputs (list python-linear-operator python-scikit-learn))
     (native-inputs (list python-coverage
-                         python-flake8
                          python-flake8-print
                          python-nbval
                          python-pytest
-- 
2.41.0

[bug#70739] [PATCH 060/714] gnu: python-mutagen: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/music.scm (python-mutagen):
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:test-flags>: Ignore flake8 quality tests.
  [native-inputs]: Remove python-flake8.

Change-Id: Ie7d2b26d6f4d9cdfdb022ea6d159c91325134320
---
 gnu/packages/music.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index a8901d24a6..e2d0cee7b5 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -3938,9 +3938,10 @@ (define-public python-mutagen
               (sha256
                (base32
                 "1qdk6i8gyhbi1c4j5jmbfpac3q8sff2ysri1pnp7nb9wzcp615v3"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags '(list "--ignore=tests/quality/test_flake8.py")
        #:phases
        #~(modify-phases %standard-phases
            (add-before 'check 'remove-hypothesis-deadlines
@@ -3951,7 +3952,7 @@ (define-public python-mutagen
                  (("( +)@given" all spaces)
                   (string-append spaces "@settings(deadline=None)\n" all))))))))
     (native-inputs
-     (list python-pytest python-hypothesis python-flake8))
+     (list python-pytest python-hypothesis))
     (home-page "https://mutagen.readthedocs.io/")
     (synopsis "Read and write audio tags")
     (description "Mutagen is a Python module to handle audio metadata.  It
-- 
2.41.0

[bug#70739] [PATCH 061/714] gnu: python-pure-protobuf: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/protobuf.scm (python-pure-protobuf):
  [arguments]<#:phases>: Remove flake8 invocation from check phase.
  [native-inputs]: Remove python-flake8.

Change-Id: I732aee31aff6e52984aeff0d4be6eafbae2d7a5c
---
 gnu/packages/protobuf.scm | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm
index 8ca730df3c..502ad09a3a 100644
--- a/gnu/packages/protobuf.scm
+++ b/gnu/packages/protobuf.scm
@@ -469,7 +469,7 @@ (define-public python-pure-protobuf
         (base32 "15dp5pvazd0jx4wzzh79080ah7hkpd3axh40al9vhzs2hf3v90hx"))))
     (build-system python-build-system)
     (native-inputs
-     (list python-flake8 python-pytest python-pytest-cov python-isort))
+     (list python-pytest python-pytest-cov python-isort))
     (arguments
      `(#:phases
        (modify-phases %standard-phases
@@ -477,8 +477,6 @@ (define-public python-pure-protobuf
            (lambda _
              (invoke "pytest" "--cov-report" "term-missing" "--cov"
                      "pure_protobuf")
-             (invoke "flake8" "pure_protobuf" "tests"
-                     "--ignore=F541")
              (invoke "isort" "-rc" "-c" "pure_protobuf" "tests"))))))
     (home-page "https://pypi.org/project/pure-protobuf/")
     (synopsis "Protobuf implementation using dataclasses")
-- 
2.41.0

[bug#70739] [PATCH 062/714] gnu: python-ovh: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-ovh):
  [native-inputs]: Remove python-flake8.

Change-Id: I10683f09aab22ce637eaf0a96a0ea1a7de788d07
---
 gnu/packages/python-web.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 3ae90c9360..31766b356d 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -975,7 +975,6 @@ (define-public python-ovh
     (arguments (list #:tests? #f))      ; XXX: tests require networking
     (propagated-inputs (list python-requests))
     (native-inputs (list python-coverage
-                         python-flake8
                          python-isort
                          python-pytest
                          python-pytest-cov
-- 
2.41.0

[bug#70739] [PATCH 063/714] gnu: python-furl: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-furl):
  [native-inputs]: Remove python-flake8.

Change-Id: I1b0f6747d7a2c93b053be88525bfe577f16c91a5
---
 gnu/packages/python-web.scm | 2 --
 1 file changed, 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 31766b356d..d509de15f6 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1239,8 +1239,6 @@ (define-public python-furl
     (build-system python-build-system)
     (propagated-inputs
      (list python-six python-orderedmultidict))
-    (native-inputs
-     (list python-flake8))
     (home-page "https://github.com/gruns/furl")
     (synopsis "URL manipulation in Python")
     (description "Furl provides an easy-to-use alternative to the
-- 
2.41.0

[bug#70739] [PATCH 064/714] gnu: python-httplib2: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-httplib2):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia9cc0ed55faaea65f6769fae052c6809cffd99a8
---
 gnu/packages/python-web.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index d509de15f6..a2456cb15e 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1271,7 +1271,6 @@ (define-public python-httplib2
                  (("==") ">=")))))))
     (native-inputs
      (list python-cryptography
-           python-flake8
            python-future
            python-mock
            python-pytest
-- 
2.41.0

[bug#70739] [PATCH 065/714] gnu: python-http-ece: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-http-ece):
  [native-inputs]: Remove python-flake8.

Change-Id: Ia22d6ab59aa65a7f77d58da9e70140d0dc17325b
---
 gnu/packages/python-web.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index a2456cb15e..12536e715d 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -7283,7 +7283,7 @@ (define-public python-http-ece
     (propagated-inputs
      (list python-cryptography))
     (native-inputs
-     (list python-coverage python-flake8 python-mock python-nose))
+     (list python-coverage python-mock python-nose))
     (home-page "https://github.com/web-push-libs/encrypted-content-encoding")
     (synopsis "Encrypted Content Encoding for HTTP")
     (description
-- 
2.41.0

[bug#70739] [PATCH 066/714] gnu: python-woob: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-woob):
  [native-inputs]: Remove python-flake8.

Change-Id: I2d2ae0b058551852c760adaeae8db275c0c46312
---
 gnu/packages/python-web.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 12536e715d..679030d13b 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8288,8 +8288,7 @@ (define-public python-woob
            python-six
            python-unidecode))
     (native-inputs
-     (list python-coverage python-flake8 python-nose python-selenium
-           python-xunitparser))
+     (list python-coverage python-nose python-selenium python-xunitparser))
     (home-page "https://woob.tech/")
     (synopsis "Woob, Web Outside Of Browsers")
     (description "Woob is a collection of applications able to interact with
-- 
2.41.0

[bug#70739] [PATCH 067/714] gnu: python-starsessions-for-pytorch-lightning: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-starsessions-for-pytorch-lightning):
  [native-inputs]: Remove python-flake8.

Change-Id: I628228d21fab2e237afcbc8ba8724d33c0f3ea01
---
 gnu/packages/python-web.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 679030d13b..d019d6b299 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8927,8 +8927,7 @@ (define-public python-starsessions-for-pytorch-lightning
            python-itsdangerous
            python-starlette-for-fastapi-0.88))
     (native-inputs
-     (list python-flake8
-           python-httpx
+     (list python-httpx
            python-mypy
            python-poetry-core
            python-pytest
-- 
2.41.0

[bug#70739] [PATCH 068/714] gnu: python-apispec: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-apispec):
  [native-inputs]: Remove python-flake8.

Change-Id: I4438d8aa6fea5d1cbb7e205462615c4ed4f0fafa
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3ec7f433ce..71306802ef 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24637,8 +24637,7 @@ (define-public python-apispec
     (propagated-inputs
      (list python-packaging))
     (native-inputs
-     (list python-flake8
-           python-flake8-bugbear
+     (list python-flake8-bugbear
            python-marshmallow
            python-mypy
            python-pytest
-- 
2.41.0

[bug#70739] [PATCH 069/714] gnu: python-apispec-webframeworks: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-apispec-webframeworks):
  [native-inputs]: Remove python-flake8.

Change-Id: I7adfa47ac2d9fdb2e349bbe20059f9567848b7cd
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 71306802ef..61618265c0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24665,7 +24665,6 @@ (define-public python-apispec-webframeworks
     (propagated-inputs (list python-apispec python-setuptools))
     (native-inputs
      (list python-bottle
-           python-flake8
            python-flake8-bugbear
            python-flask
            python-mock
-- 
2.41.0

[bug#70739] [PATCH 070/714] gnu: python-flasgger: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-flasgger):
  [native-inputs]: Remove python-flake8.

Change-Id: I35d38195a30074c278343dab2e4c4cb5979a1163
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 61618265c0..55458e282d 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24713,7 +24713,6 @@ (define-public python-flasgger
      (list python-apispec
            python-apispec-webframeworks
            python-decorator
-           python-flake8
            python-flask-jwt
            python-flask-restful
            python-flex
-- 
2.41.0

[bug#70739] [PATCH 071/714] gnu: python-yq: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-yq):
  [native-inputs]: Remove python-flake8.

Change-Id: I48bc10bf085b1c85e35d0d92be06de84a7b334dc
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 55458e282d..0f0a0cacaa 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -25701,7 +25701,7 @@ (define-public python-yq
     (inputs
      (list python-argcomplete python-pyyaml python-xmltodict python-toml jq))
     (native-inputs
-     (list python-coverage python-flake8 python-setuptools-scm python-wheel))
+     (list python-coverage python-setuptools-scm python-wheel))
     (home-page "https://github.com/kislyuk/yq")
     (synopsis "Command-line YAML/XML processor")
     (description
-- 
2.41.0

[bug#70739] [PATCH 072/714] gnu: python-update-checker: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-update-checker):
  [native-inputs]: Remove python-flake8.

Change-Id: I539d556abf5a881b2cf308b0412f5b71f717c7fb
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0f0a0cacaa..c96235ea04 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -26707,7 +26707,7 @@ (define-public python-update-checker
         (base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba"))))
     (build-system python-build-system)
     (propagated-inputs (list python-requests))
-    (native-inputs (list python-flake8 python-pytest))
+    (native-inputs (list python-pytest))
     (home-page "https://github.com/bboe/update_checker")
     (synopsis "Python module that will check for package updates")
     (description "This package provides a Python module that will check for
-- 
2.41.0

[bug#70739] [PATCH 073/714] gnu: python-eliot: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-eliot):
  [native-inputs]: Remove python-flake8.

Change-Id: I9bd8eed21fa875c4a9e2ba313d2e8ee4d4b51fb9
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c96235ea04..7be9e982f0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -30682,7 +30682,6 @@ (define-public python-eliot
     (native-inputs
      (list python-coverage
            python-dask
-           python-flake8
            python-hypothesis
            python-pytest
            python-setuptools
-- 
2.41.0

[bug#70739] [PATCH 074/714] gnu: python-dateparser: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-dateparser):
  [native-inputs]: Remove python-flake8.

Change-Id: I5e9b419b4a9d23cac5a612b86168250b487f7cad
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7be9e982f0..2594345f83 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -31476,7 +31476,7 @@ (define-public python-dateparser
      (list python-dateutil python-pytz python-regex python-ruamel.yaml
            python-tzlocal))
     (native-inputs
-     (list python-flake8 python-pytest python-parameterized tzdata-for-tests
+     (list python-pytest python-parameterized tzdata-for-tests
            python-setuptools python-wheel))
     (arguments
      `(#:phases
-- 
2.41.0

[bug#70739] [PATCH 075/714] gnu: python-versioneer: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-versioneer):
  [arguments]<#:phases>: Remove flake8 invocation during check phase.
  [native-inputs]: Remove python-flake8.

Change-Id: Ied4ee355674413f99f4625b499d9418bdaf3e9e1
---
 gnu/packages/python-xyz.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2594345f83..11407c3720 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -31962,11 +31962,10 @@ (define-public python-versioneer
                 (invoke "pyflakes" "setup.py" "versioneer.py" "git_version.py")
                 (invoke "python" "test/run_pyflakes_src.py")
                 (invoke "pyflakes" "test")
-                (invoke "flake8" "git_version.py" "versioneer.py")
                 (invoke "pycodestyle" "--max-line-length=88"
                         "git_version.py" "versioneer.py")))))))
     (native-inputs
-     (list git-minimal python-flake8 python-pycodestyle python-pyflakes
+     (list git-minimal python-pycodestyle python-pyflakes
            python-pypa-build python-setuptools python-wheel))
     (propagated-inputs
      (list python-tomli))
-- 
2.41.0

[bug#70739] [PATCH 076/714] gnu: python-jinja2-cli: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-jinja2-cli):
  [native-inputs]: Remove python-flake8.

Change-Id: I2227be027b43a3d99fd67f257bc82ade75f16c86
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 11407c3720..4474fa473a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -32717,7 +32717,7 @@ (define-public python-jinja2-cli
     (propagated-inputs
       (list python-jinja2))
     (native-inputs
-      (list python-flake8 python-jinja2 python-pytest))
+      (list python-jinja2 python-pytest))
     (home-page "https://github.com/mattrobenolt/jinja2-cli")
     (synopsis "Command-line interface to Jinja2")
     (description
-- 
2.41.0

[bug#70739] [PATCH 077/714] gnu: nikola: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (nikola):
  [native-inputs]: Remove python-flake8.

Change-Id: I639daa3b94f9c597188d5388cf98eeeaf6be6b66
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 4474fa473a..c6fe720eea 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -34314,7 +34314,6 @@ (define-public nikola
             python-yapsy))
     (native-inputs
       (list python-coverage
-            python-flake8
             python-freezegun
             python-pytest
             python-pytest-cov))
-- 
2.41.0

[bug#70739] [PATCH 078/714] gnu: python-verspec: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-verspec):
  [native-inputs]: Remove python-flake8.

Change-Id: Ica0c1c691bb8a3eb5781d28bacfba6585b236bde
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c6fe720eea..f6f7f6e6e7 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -34779,7 +34779,7 @@ (define-public python-verspec
                (base32
                 "07n06wv85fm4vl1ird2mja0823js3x322wgs9gdnq1djjyk4ql64"))))
     (build-system python-build-system)
-    (native-inputs (list python-coverage python-flake8 python-mypy
+    (native-inputs (list python-coverage python-mypy
                          python-pretend python-pytest))
     (arguments
      `(#:phases (modify-phases %standard-phases
-- 
2.41.0

[bug#70739] [PATCH 079/714] gnu: python-mike: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-mike):
  [native-inputs]: Remove python-flake8.

Change-Id: Iedfcce33b515b95322576c5394df91f7c5549542
---
 gnu/packages/python-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f6f7f6e6e7..5f541e674a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -35164,7 +35164,7 @@ (define-public python-mike
                 "0yxp816x7s948xsd0fifvq9shg01xdxlifd9rzf5y2rd9iwz3hsn"))))
     (build-system python-build-system)
     (native-inputs
-     (list python-coverage python-flake8 python-shtab))
+     (list python-coverage python-shtab))
     (propagated-inputs
      (list python-jinja2 python-mkdocs python-pyyaml python-verspec))
     (home-page "https://github.com/jimporter/mike")
-- 
2.41.0

[bug#70739] [PATCH 080/714] gnu: python-arpeggio: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-xyz.scm (python-arpeggio):
  [native-inputs]: Remove python-flake8.

Change-Id: I447e580cf6ac8308313f00ae0c63f2f0e9a33e76
---
 gnu/packages/python-xyz.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5f541e674a..4ce25fe5bc 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -35188,7 +35188,6 @@ (define-public python-arpeggio
     (build-system python-build-system)
     (native-inputs (list python-coverage
                          python-coveralls
-                         python-flake8
                          python-mike
                          python-mkdocs
                          python-pytest
-- 
2.41.0

[bug#70739] [PATCH 081/714] gnu: python-dolfin-adjoint: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/simulation.scm (python-dolfin-adjoint):
  [native-inputs]: Remove python-flake8.

Change-Id: Ic641283337cccc6b509da38f02997e6bac92c98e
---
 gnu/packages/simulation.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index b2fb123815..adc0571f50 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -1219,7 +1219,6 @@ (define-public python-dolfin-adjoint
      (list pkg-config
            python-coverage
            python-decorator
-           python-flake8
            python-pkgconfig
            python-pytest))
     (propagated-inputs
-- 
2.41.0

[bug#70739] [PATCH 082/714] gnu: python-statsmodels: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/statistics.scm (python-statsmodels):
  [native-inputs]: Remove python-flake8.

Change-Id: I48bfaf908bf2d1e88362437eb172627a0c1b5e07
---
 gnu/packages/statistics.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 2aae5f19ad..951dd1f304 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2437,7 +2437,6 @@ (define-public python-statsmodels
     (native-inputs
      (list python-colorama
            python-cython
-           python-flake8
            python-isort
            python-joblib
            python-matplotlib
-- 
2.41.0

[bug#70739] [PATCH 083/714] gnu: python-panflute: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/textutils.scm (python-panflute):
  [native-inputs]: Remove python-flake8.

Change-Id: I9f6983f302e8c9cb23306950258277ae5c93ce8b
---
 gnu/packages/textutils.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index 4374f59ffa..dc72ed2330 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -1549,7 +1549,6 @@ (define-public python-panflute
     (propagated-inputs (list python-click python-pyyaml))
     (native-inputs (list python-configparser
                          python-coverage
-                         python-flake8
                          python-pandocfilters
                          python-pytest
                          python-pytest-cov
-- 
2.41.0

[bug#70739] [PATCH 084/714] gnu: sshuttle: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/vpn.scm (sshuttle):
  [native-inputs]: Remove python-flake8.

Change-Id: I0e08c16841a475991a593dbaf747b945cc89cb76
---
 gnu/packages/vpn.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index 7823ef19eb..53faf3e6bc 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -980,7 +980,6 @@ (define-public sshuttle
     (native-inputs
      (list python-setuptools-scm
            ;; For tests only.
-           python-flake8
            python-mock
            python-pytest-cov
            python-pytest-runner))
-- 
2.41.0

[bug#70739] [PATCH 085/714] gnu: qtile: Remove python-flake8 native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/wm.scm (qtile):
  [native-inputs]: Remove python-flake8.

Change-Id: Icdf708222a4ff538c03d5949a886dca112311075
---
 gnu/packages/wm.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 6d2484a7fa..3c371e8d95 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -639,7 +639,6 @@ (define-public qtile
             python-xcffib))
     (native-inputs
       (list pkg-config
-            python-flake8
             python-pep8-naming
             python-psutil
             python-pytest-cov
-- 
2.41.0

[bug#70739] [PATCH 086/714] gnu: python-http-ece: Update to 1.2.0.

[Nicolas Graves via Guix-patches via]

* gnu/packages/python-web.scm (python-http-ece): Update to 1.2.0.

Change-Id: I8d82959841b64db48eb01b88914298ba12f1a388
---
 gnu/packages/python-web.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index d019d6b299..0b60f5248e 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -7263,7 +7263,7 @@ (define-public python-js2py
 (define-public python-http-ece
   (package
     (name "python-http-ece")
-    (version "1.1.0")
+    (version "1.2.0")
     (source
       (origin
         (method git-fetch)
@@ -7273,7 +7273,7 @@ (define-public python-http-ece
         (file-name (git-file-name name version))
         (sha256
          (base32
-          "0bp4cc0xc123i72h80ax3qz3ixfwx3j7pw343kc7i6kdvfi8klx7"))))
+          "11v9cpmx4jc0nk25af96plzjz3mg1ysm1m001nx6jns06hil1gpy"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
-- 
2.41.0

[bug#70739] [PATCH 087/714] gnu: python-androguard: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/android.scm (python-androguard):
  [native-inputs]: Remove python-coverage.

Change-Id: I693508bbac1d23a70fdd19b6508809cc33e60b65
---
 gnu/packages/android.scm | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/android.scm b/gnu/packages/android.scm
index b5b1b75fba..14219b2849 100644
--- a/gnu/packages/android.scm
+++ b/gnu/packages/android.scm
@@ -1071,11 +1071,9 @@ (define-public python-androguard
          (replace 'check
            ;; Adapted from .travis.yml
            (lambda _
-             (invoke "nosetests" "--with-coverage" "--with-timer"
-                     "--timer-top-n" "50"))))))
+             (invoke "nosetests" "--with-timer" "--timer-top-n" "50"))))))
     (native-inputs
-     (list python-codecov python-coverage python-mock python-nose
-           python-nose-timer))
+     (list python-codecov python-mock python-nose python-nose-timer))
     (propagated-inputs
      (list python-asn1crypto
            python-colorama
-- 
2.41.0

[bug#70739] [PATCH 088/714] gnu: python-astropy: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/astronomy.scm (python-astropy):
  [native-inputs]: Remove python-coverage.

Change-Id: Ibe31312409bf70d7ecb7a6f65a47982ba02edb3c
---
 gnu/packages/astronomy.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 3eb847e159..b44bca6e59 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1620,7 +1620,6 @@ (define-public python-astropy
     (native-inputs
      (list pkg-config
            python-colorlog
-           python-coverage
            python-cython-3
            python-extension-helpers
            python-h5py
-- 
2.41.0

[bug#70739] [PATCH 089/714] gnu: python-poliastro: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/astronomy.scm (python-poliastro):
  [native-inputs]: Remove python-coverage.

Change-Id: Ic81b78226bfd239cb8ccdafe29992cc47df31496
---
 gnu/packages/astronomy.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b44bca6e59..a17f2d2026 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2524,8 +2524,7 @@ (define-public python-poliastro
             (lambda _
               (setenv "HOME" "/tmp"))))))
     (native-inputs
-     (list python-coverage
-           python-hypothesis
+     (list python-hypothesis
            python-mypy
            python-flit-core
            python-pytest
-- 
2.41.0

[bug#70739] [PATCH 090/714] gnu: python-ega-download-client: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-ega-download-client):
  [native-inputs]: Remove python-coverage.

Change-Id: Ic270422866db874900ae0eba99fb3264de585390
---
 gnu/packages/bioinformatics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9019ca8bab..c7fe02132e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2577,7 +2577,7 @@ (define-public python-ega-download-client
                (("==") ">=")))))))
     (propagated-inputs (list python-htsget python-psutil python-requests
                              python-tqdm python-urllib3))
-    (native-inputs (list python-coverage python-pytest python-pyfakefs
+    (native-inputs (list python-pytest python-pyfakefs
                          python-responses python-mock))
     (home-page "https://github.com/EGA-archive/ega-download-client")
     (synopsis "EGA download client")
-- 
2.41.0

[bug#70739] [PATCH 091/714] gnu: python-scikit-bio: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-scikit-bio):
  [native-inputs]: Remove python-coverage.

Change-Id: Ia5bf6e91757c5c9ca2962e9a472e5112e747919d
---
 gnu/packages/bioinformatics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c7fe02132e..1954e992d8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5125,7 +5125,7 @@ (define-public python-scikit-bio
            python-requests
            python-scipy))
     (native-inputs
-     (list python-coverage python-pytest))
+     (list python-pytest))
     (home-page "https://scikit-bio.org")
     (synopsis "Data structures, algorithms and educational resources for bioinformatics")
     (description
-- 
2.41.0

[bug#70739] [PATCH 092/714] gnu: python-cooler: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bioinformatics.scm (python-cooler):
  [native-inputs]: Remove python-coverage.

Change-Id: I7a413db0443c01b5e92541a9524ed0498189ea7d
---
 gnu/packages/bioinformatics.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1954e992d8..918f124d98 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17656,8 +17656,7 @@ (define-public python-cooler
            python-scipy
            python-simplejson))
     (native-inputs
-     (list python-coverage
-           python-hatchling
+     (list python-hatchling
            python-isort
            python-pytest
            python-pytest-cov))
-- 
2.41.0

[bug#70739] [PATCH 093/714] gnu: u-boot-tools: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/bootloaders.scm (u-boot-tools):
  [native-inputs]: Remove python-coverage.
  [arguments]<#:phases>: Adapt patch phase.

Change-Id: I94394544079197b4a3f8c53cc0b3d78d1f5dc8be
---
 gnu/packages/bootloaders.scm | 17 ++++-------------
 1 file changed, 4 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm
index 0e7bc66bd7..cf568b2bd6 100644
--- a/gnu/packages/bootloaders.scm
+++ b/gnu/packages/bootloaders.scm
@@ -802,8 +802,7 @@ (define-public u-boot-tools
     (name "u-boot-tools")
     (native-inputs
      (modify-inputs (package-native-inputs u-boot)
-       (prepend python-coverage
-                python-filelock
+       (prepend python-filelock
                 python-pycryptodomex
                 python-pytest
                 python-pytest-xdist
@@ -820,14 +819,6 @@ (define-public u-boot-tools
                (("/bin/false") (which "false")))
              (substitute* "tools/dtoc/fdt_util.py"
                (("'cc'") "'gcc'"))
-             (substitute* "tools/u_boot_pylib/test_util.py"
-               ;; python3-coverage is simply called coverage in guix.
-               (("python3-coverage") "coverage")
-
-               ;; Don't require 100% coverage since it's brittle and can
-               ;; fail with newer versions of coverage or dependencies.
-               (("raise ValueError\\('Test coverage failure'\\)")
-                "print('Continuing anyway since Guix does not care :O')"))
              (substitute* "test/run"
                ;; Make it easier to find test failures.
                (("#!/bin/bash") "#!/bin/bash -x")
@@ -838,9 +829,9 @@ (define-public u-boot-tools
                ;; FIXME: test_spl fails, needs further investiation
                (("test_ofplatdata or test_handoff or test_spl")
                 "test_ofplatdata or test_handoff")
-               ;; FIXME: code coverage not working
-               (("run_test \"binman code coverage\"")
-                "# run_test \"binman code coverage\"")
+               ;; Disable code coverage tests.
+               (("run_test \"(\\w+) code coverage\"" all)
+                (string-append "# " all))
                ;; This test would require internet access.
                (("\\./tools/buildman/buildman") (which "true")))
              (substitute* "test/py/tests/test_sandbox_exit.py"
-- 
2.41.0

[bug#70739] [PATCH 094/714] gnu: python-pytest-randomly: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/check.scm (python-pytest-randomly):
  [native-inputs]: Remove python-coverage.

Change-Id: I652fb11a3608e047b565bc3d4458a3efb9c4709d
---
 gnu/packages/check.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 64076a4547..2f9533cf09 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1602,8 +1602,7 @@ (define-public python-pytest-randomly
                          "not reordered "
                          "and not test_it_runs_before_stepwise "
                          "and not test_entrypoint_injection"))))))))
-    (native-inputs (list python-coverage
-                         python-factory-boy
+    (native-inputs (list python-factory-boy
                          python-faker
                          python-numpy
                          python-pytest-xdist))
-- 
2.41.0

[bug#70739] [PATCH 095/714] gnu: python-pytest-flakes: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/check.scm (python-pytest-flakes):
  [native-inputs]: Remove python-coverage.

Change-Id: Ia33921bc6481bf6ebd6e88d5a28e2e19579b6f91
---
 gnu/packages/check.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 2f9533cf09..5f52109f11 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -2728,7 +2728,7 @@ (define-public python-pytest-flakes
              (add-installed-pythonpath inputs outputs)
              (invoke "py.test" "-vv" "-k" "not test_syntax_error"))))))
     (native-inputs
-     (list python-coverage python-pytest python-pytest-pep8))
+     (list python-pytest python-pytest-pep8))
     (propagated-inputs
      (list python-pyflakes))
     (home-page "https://github.com/fschulze/pytest-flakes")
-- 
2.41.0

[bug#70739] [PATCH 096/714] gnu: python-aiounittest: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/check.scm (python-aiounittest):
  [native-inputs]: Remove python-coverage.

Change-Id: I0a6795559fd409bdba1d69c60692dc228d2bc17c
---
 gnu/packages/check.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 5f52109f11..3b89eacb1d 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -3587,7 +3587,7 @@ (define-public python-aiounittest
                       #t)))))
     (propagated-inputs (list python-wrapt))
     (native-inputs
-     (list python-coverage python-nose))
+     (list python-nose))
     (home-page
      "https://github.com/kwarunek/aiounittest")
     (synopsis "Test asyncio code more easily")
-- 
2.41.0

[bug#70739] [PATCH 097/714] gnu: python-aiosqlite: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/databases.scm (python-aiosqlite):
  [arguments]<#:phases>: Adapt check phase.
  [native-inputs]: Remove python-coverage.

Change-Id: I165d174426022f0603223e3def91ffe280f15899
---
 gnu/packages/databases.scm | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 1ac5d35056..955eed7cef 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3936,15 +3936,13 @@ (define-public python-aiosqlite
                 "1a8sggh1wwbpl46k5qcfmp97s9hjysna0x7mwwc53kyfm0m95wf8"))))
     (build-system pyproject-build-system)
     (arguments
-     (list #:phases #~(modify-phases %standard-phases
-                        (replace 'check
-                          (lambda* (#:key tests? #:allow-other-keys)
-                            (when tests?
-                              (invoke "python" "-m" "coverage" "run" "-m"
-                                      "aiosqlite.tests")
-                              (invoke "python" "-m" "coverage" "report")))))))
+     (list #:phases
+           #~(modify-phases %standard-phases
+               (replace 'check
+                 (lambda* (#:key tests? #:allow-other-keys)
+                   (when tests?
+                     (invoke "python" "-m" "aiosqlite.tests")))))))
     (native-inputs (list python-flit-core
-                         python-coverage
                          python-mypy))
     (home-page "https://github.com/jreese/aiosqlite")
     (synopsis
-- 
2.41.0

[bug#70739] [PATCH 098/714] gnu: reprotest: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/diffoscope.scm (reprotest):
  [native-inputs]: Remove python-coverage.

Change-Id: I4d9e11f2f416524e910b9b0508caac24d158953a
---
 gnu/packages/diffoscope.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/diffoscope.scm b/gnu/packages/diffoscope.scm
index 5bbb4f51e2..5d38a612da 100644
--- a/gnu/packages/diffoscope.scm
+++ b/gnu/packages/diffoscope.scm
@@ -262,7 +262,6 @@ (define-public reprotest
      `(("diffoscope" ,diffoscope)
        ("help2man" ,help2man)
        ("libfaketime" ,libfaketime)
-       ("python-coverage" ,python-coverage)
        ("python-docutils" ,python-docutils)
        ("python-magic " ,python-magic)
        ("python-pytest " ,python-pytest)
-- 
2.41.0

[bug#70739] [PATCH 099/714] gnu: python-django-localflavor: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/django.scm (python-django-localflavor):
  [native-inputs]: Remove python-coverage.

Change-Id: I6fd3d0b5a3c671bb0ec06018becac745512e29e8
---
 gnu/packages/django.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 6a373be359..28866abf93 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -296,7 +296,7 @@ (define-public python-django-localflavor
                                       (getenv "GUIX_PYTHONPATH")))
                (invoke "invoke" "test")))))))
     (native-inputs
-     (list python-coverage python-invoke python-pytest-django which))
+     (list python-invoke python-pytest-django which))
     (propagated-inputs
      (list python-django python-stdnum))
     (home-page "https://django-localflavor.readthedocs.io/en/latest/")
-- 
2.41.0

[bug#70739] [PATCH 100/714] gnu: python-django-haystack: Remove python-coverage native-input.

[Nicolas Graves via Guix-patches via]

* gnu/packages/django.scm (python-django-haystack):
  [native-inputs]: Remove python-coverage.

Change-Id: If9aba668d50095322cc3f798bae831d704421661
---
 gnu/packages/django.scm | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 28866abf93..c43b9891a8 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -496,7 +496,6 @@ (define-public python-django-haystack
      (list python-django))
     (native-inputs
      (list gdal
-           python-coverage
            python-dateutil
            python-geopy
            python-mock
-- 
2.41.0