From: Romain GARBAGE <romain.garbage@inria.fr>
To: 69729@debbugs.gnu.org
Cc: Romain GARBAGE <romain.garbage@inria.fr>
Subject: [bug#69729] [PATCH 00/41] Improve performance in lapack dependent packages.
Date: Mon, 11 Mar 2024 12:01:55 +0100 [thread overview]
Message-ID: <20240311110423.10785-1-romain.garbage@inria.fr> (raw)
This patch series aims at improving the performance of several packages by changing the LAPACK library they depend on.
The package `lapack` is the reference implementation from netlib.org of a numerical linear algebra library, written in FORTRAN.
The package `openblas` is a optimized implementation of the LAPACK and BLAS APIs.
Among the modified packages affected by the change, the following don't build:
* shogun: atlas dependency doesn't build (pre-existing error)
* lush2: preexisting error
* proteinortho: preexisting error (tests 2 and 3 fail)
* superlu-dist: dependency failure (combinatorial-blas)
Also, the following packages have not been modified as it breaks the package:
* xyce-serial
* xyce-parallel
* gnss-sdr
* julia
Romain GARBAGE (41):
gnu: arpack-ng: Switch to openblas.
gnu: armadillo: Switch to openblas.
gnu: octave-cli: Switch to openblas.
gnu: scalapack: Switch to openblas.
gnu: hypre: Switch to openblas.
gnu: igraph: Switch to openblas.
gnu: vosk-api: Remove dependency on lapack.
gnu: jags: Switch to openblas.
gnu: sbcl-lla: Switch to openblas.
gnu: itpp: Switch to openblas.
gnu: gmsh: Switch to openblas.
gnu: ghc-hmatrix: Switch to openblas.
gnu: fenics-dolfin: Remove dependency on lapack.
gnu: ipopt: Switch to openblas.
gnu: ceres: Remove dependency on lapack.
gnu: sundials-julia: Switch to openblas.
gnu: plink: Switch to openblas.
gnu: p4est: Remove dependency on lapack.
gnu: plink-ng: Remove lapack dep.
gnu: dealii: Remove dependency on lapack.
gnu: elemental: Remove dependency on lapack.
gnu: superlu-dist: Remove dependency on lapack.
gnu: bonmin: Switch to openblas.
gnu: mpb: Switch to openblas.
gnu: meep: Switch to openblas.
gnu: casacore: Remove dependency on lapack.
gnu: aoflagger: Remove dependency on lapack.
gnu: apl: Switch to openblas.
gnu: eigensoft: Remove dependency on lapack.
gnu: proteinortho: Remove dependency on lapack.
gnu: scilab: Remove dependency on lapack.
gnu: python-cvxopt: Remove dependency on lapack.
gnu: dlib: Remove dependency on lapack.
gnu: grass: Remove dependency on lapack.
gnu: harminv: Switch to openblas.
gnu: giac: Switch to openblas.
gnu: libflame: Switch to openblas.
gnu: lush2: Remove dependency on lapack.
gnu: shogun: Switch to openblas.
gnu: kaldi-for-vosk: Remove dependency on lapack.
gnu: ocaml-lacaml: Remove dependency on lapack.
gnu/packages/algebra.scm | 2 +-
gnu/packages/apl.scm | 2 +-
gnu/packages/astronomy.scm | 2 --
gnu/packages/bioinformatics.scm | 17 ++++++------
gnu/packages/engineering.scm | 6 ++--
gnu/packages/geo.scm | 6 +++-
gnu/packages/graph.scm | 2 +-
gnu/packages/haskell-xyz.scm | 9 ++----
gnu/packages/lisp-xyz.scm | 6 ++--
gnu/packages/lisp.scm | 1 -
gnu/packages/machine-learning.scm | 15 ++++------
gnu/packages/maths.scm | 46 ++++++++++++++-----------------
gnu/packages/ocaml.scm | 9 ++++--
gnu/packages/simulation.scm | 3 +-
gnu/packages/statistics.scm | 6 +++-
15 files changed, 65 insertions(+), 67 deletions(-)
--
2.41.0
next reply other threads:[~2024-03-11 11:05 UTC|newest]
Thread overview: 45+ messages / expand[flat|nested] mbox.gz Atom feed top
2024-03-11 11:01 Romain GARBAGE [this message]
2024-03-11 11:06 ` [bug#69729] [PATCH 01/41] gnu: arpack-ng: Switch to openblas Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 02/41] gnu: armadillo: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 03/41] gnu: octave-cli: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 04/41] gnu: scalapack: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 05/41] gnu: hypre: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 06/41] gnu: igraph: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 07/41] gnu: vosk-api: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 08/41] gnu: jags: Switch to openblas Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 09/41] gnu: sbcl-lla: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 10/41] gnu: itpp: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 11/41] gnu: gmsh: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 12/41] gnu: ghc-hmatrix: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 13/41] gnu: fenics-dolfin: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 14/41] gnu: ipopt: Switch to openblas Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 15/41] gnu: ceres: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 16/41] gnu: sundials-julia: Switch to openblas Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 17/41] gnu: plink: " Romain GARBAGE
2024-03-11 11:06 ` [bug#69729] [PATCH 18/41] gnu: p4est: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 19/41] gnu: plink-ng: Remove lapack dep Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 20/41] gnu: dealii: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 21/41] gnu: elemental: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 22/41] gnu: superlu-dist: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 23/41] gnu: bonmin: Switch to openblas Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 24/41] gnu: mpb: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 25/41] gnu: meep: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 26/41] gnu: casacore: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 27/41] gnu: aoflagger: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 28/41] gnu: apl: Switch to openblas Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 29/41] gnu: eigensoft: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 30/41] gnu: proteinortho: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 31/41] gnu: scilab: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 32/41] gnu: python-cvxopt: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 33/41] gnu: dlib: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 34/41] gnu: grass: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 35/41] gnu: harminv: Switch to openblas Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 36/41] gnu: giac: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 37/41] gnu: libflame: " Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 38/41] gnu: lush2: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 39/41] gnu: shogun: Switch to openblas Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 40/41] gnu: kaldi-for-vosk: Remove dependency on lapack Romain GARBAGE
2024-03-11 11:07 ` [bug#69729] [PATCH 41/41] gnu: ocaml-lacaml: " Romain GARBAGE
2024-03-28 10:40 ` [bug#69729] [PATCH 00/41] Improve performance in lapack dependent packages Ludovic Courtès
2024-04-02 20:52 ` Christopher Baines
2024-04-04 15:17 ` bug#69729: " Ludovic Courtès
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