unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: Vinicius Monego <monego@posteo.net>
To: 63619@debbugs.gnu.org
Cc: Vinicius Monego <monego@posteo.net>
Subject: [bug#63619] [PATCH 9/9] gnu: Add python-pymc.
Date: Sat, 20 May 2023 23:12:41 +0000	[thread overview]
Message-ID: <20230520231241.962799-9-monego@posteo.net> (raw)
In-Reply-To: <20230520231241.962799-1-monego@posteo.net>

* gnu/packages/statistics.scm (python-pymc): New variable.
---
 gnu/packages/statistics.scm | 40 +++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c39cf9c0ac..4aac3369ad 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2192,6 +2192,46 @@ (define-public python-arviz
 comparison and diagnostics.")
     (license license:asl2.0)))
 
+(define-public python-pymc
+  (package
+    (name "python-pymc")
+    (version "5.3.1")
+    (source (origin
+              (method git-fetch)        ; no tests in PyPI
+              (uri (git-reference
+                    (url "https://github.com/pymc-devs/pymc")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1295b0d1zgnpy2hgm0i9jhnnqgzkya7cwcyhq45fdrz65mi9b65h"))))
+    (build-system pyproject-build-system)
+    (arguments
+     ;; Tests are computationally intensive and around 130 tests out of ~2800
+     ;; fail due to a missing .cc file in PyTensor.
+     (list #:tests? #f
+           #:phases #~(modify-phases %standard-phases
+                        (add-after 'unpack 'write-permissions
+                          (lambda _
+                            (setenv "HOME" "/tmp"))))))
+    (native-inputs (list python-pytest-cov))
+    (propagated-inputs (list python-arviz
+                             python-cachetools
+                             python-cloudpickle
+                             python-fastprogress
+                             python-numpy
+                             python-pandas
+                             python-pytensor
+                             python-scipy
+                             python-typing-extensions))
+    (home-page "https://github.com/pymc-devs/pymc")
+    (synopsis "Library for probabilistic programming in Python")
+    (description
+     "PyMC (formerly PyMC3) is a Python package for Bayesian
+statistical modeling focusing on advanced Markov chain Monte Carlo (MCMC) and
+variational inference (VI) algorithms.")
+    (license license:asl2.0)))
+
 (define-public python-patsy
   (package
     (name "python-patsy")
-- 
2.34.1





  parent reply	other threads:[~2023-05-20 23:15 UTC|newest]

Thread overview: 25+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-05-20 23:10 [bug#63619] [PATCH 0/9] Add PyMC Vinicius Monego
2023-05-20 23:12 ` [bug#63619] [PATCH 1/9] gnu: Add python-vega-datasets Vinicius Monego
2023-05-20 23:12   ` [bug#63619] [PATCH 2/9] gnu: Add python-altair Vinicius Monego
2023-05-20 23:12   ` [bug#63619] [PATCH 3/9] gnu: Add python-einops Vinicius Monego
2023-05-20 23:12   ` [bug#63619] [PATCH 4/9] gnu: python-xarray: Update to 2023.5.0 Vinicius Monego
2023-05-20 23:12   ` [bug#63619] [PATCH 5/9] gnu: Add python-xarray-einstats Vinicius Monego
2023-05-20 23:12   ` [bug#63619] [PATCH 6/9] gnu: Add python-arviz Vinicius Monego
2023-05-20 23:12   ` [bug#63619] [PATCH 7/9] gnu: Add python-fastprogress Vinicius Monego
2023-05-20 23:12   ` [bug#63619] [PATCH 8/9] gnu: Add python-pytensor Vinicius Monego
2023-05-20 23:12   ` Vinicius Monego [this message]
2023-06-05 13:01 ` [bug#63619] [PATCH 0/9] Add PyMC Ludovic Courtès
2023-06-09  4:10   ` Vinicius Monego
2023-06-14 21:05     ` Ludovic Courtès
2023-06-14 22:46       ` Vinicius Monego
2023-06-21 21:48         ` Ludovic Courtès
2023-06-25 14:01           ` bug#63619: " Vinicius Monego
2023-06-09  3:49 ` [bug#63619] [PATCH v2 1/9] gnu: Add python-vega-datasets Vinicius Monego
2023-06-09  3:49   ` [bug#63619] [PATCH v2 2/9] gnu: Add python-altair Vinicius Monego
2023-06-09  3:49   ` [bug#63619] [PATCH v2 3/9] gnu: Add python-einops Vinicius Monego
2023-06-09  3:49   ` [bug#63619] [PATCH v2 4/9] gnu: python-xarray: Update to 2023.5.0 Vinicius Monego
2023-06-09  3:49   ` [bug#63619] [PATCH v2 5/9] gnu: Add python-xarray-einstats Vinicius Monego
2023-06-09  3:49   ` [bug#63619] [PATCH v2 6/9] gnu: Add python-arviz Vinicius Monego
2023-06-09  3:49   ` [bug#63619] [PATCH v2 7/9] gnu: Add python-fastprogress Vinicius Monego
2023-06-09  3:49   ` [bug#63619] [PATCH v2 8/9] gnu: Add python-pytensor Vinicius Monego
2023-06-09  3:49   ` [bug#63619] [PATCH v2 9/9] gnu: Add python-pymc Vinicius Monego

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20230520231241.962799-9-monego@posteo.net \
    --to=monego@posteo.net \
    --cc=63619@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).