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(license license:bsd-3))) +(define-public maffilter + (package + (name "maffilter") + (version "1.3.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/jydu/maffilter/archive/v" + version ".tar.gz")) + (sha256 + (base32 "0xgbadjad54hjdh743qszyv4yvdpi45519h6cj6sfgybsr93385l")))) + (build-system cmake-build-system) + (arguments + (list #:tests? #f)) ; No tests provided. + (inputs + (list bpp-core + bpp-phyl + bpp-phyl-omics + bpp-seq + bpp-seq-omics + boost + zlib)) + (home-page "https://jydu.github.io/maffilter/") + (synopsis "Multiple alignment format file processor") + (description + "MafFilter is a program dedicated to the analysis of genome alignments. It +parses and manipulates @acronym{MAF, multiple alignment format} files as well as +more simple fasta files. This package can be used to design a pipeline as a +series of consecutive filters, each performing a dedicated analysis. Many of +the filters are available, from alignment cleaning to phylogeny reconstruction +and population genetics analysis. Despite various filtering options and format +conversion tools, MafFilter can compute a wide range of statistics (phylogenetic +trees, nucleotide diversity, inferrence of selection, etc.).") + (license license:gpl3))) + (define-public mafft (package (name "mafft") -- 2.39.2