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bh=rpD7qfF6sgQRdBn4e/9jKeE0MF+t1XhW2t6uFam2NQc=; b=HYCt7kFarx85F8W8TTp2uJ1JOEikk/07I89x6WN94SK73n1DWamwcmipi5JTldNzeegyIS gqGqcRZrL/9/q6qTeolLguvZFPvICSrOrTJdETglEFiFIfjAIMalBQght3k6dPEmcPZkTy +mq8eHClIgFHREoR6oPJhkEmTIePKGRHWUYgOjlkDl7ZjnCVI9FThUiUmcF7fDoPeYDzCY aR+LLjLnw/yThCoS3PsLDRST/kUgZMA5J+xMFieJyMuWzELQ1FKwgk/HiKT/hyCwhwS6hu lftTDkBYbusmfCpe5Q0zuqaHHyzwnmTC7983u2ggWPxNbZfiUUciiDi8UJ5NGg== X-Migadu-Scanner: scn1.migadu.com Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=U4dpoenq; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.38 X-Spam-Score: 6.38 X-Migadu-Queue-Id: A9D9E2A24E X-TUID: zLOzjtPlSjks * gnu/packages/bioinformatics.scm (bpp-popgen): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build. [home-page]: Changed to new host Université Claude-Bernard Lyon 1. --- gnu/packages/bioinformatics.scm | 49 +++++++++++++++------------------ 1 file changed, 22 insertions(+), 27 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c4cea24632..3969e205b3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2296,35 +2296,30 @@ (define-public bpp-phyl-omics (license license:cecill))) (define-public bpp-popgen - ;; The last release was in 2014 and the recommended way to install from source - ;; is to clone the git repository, so we do this. - ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page - (let ((commit "e472bac9b1a148803895d747cd6d0c5904f85d9f")) - (package - (name "bpp-popgen") - (version (string-append "2.2.0-1." (string-take commit 7))) - (source (origin - (method git-fetch) - (uri (git-reference - (url "http://biopp.univ-montp2.fr/git/bpp-popgen") - (commit commit))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "0yn82dzn1n5629nzja68xfrhi655709rjanyryb36vzkmymy6dw5")))) - (build-system cmake-build-system) - (arguments - `(#:parallel-build? #f - #:tests? #f)) ; There are no tests. - (inputs - (list bpp-core bpp-seq)) - (home-page "http://biopp.univ-montp2.fr") - (synopsis "Bio++ population genetics library") - (description - "Bio++ is a set of C++ libraries for Bioinformatics, including sequence + (package + (name "bpp-popgen") + (version "2.4.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BioPP/bpp-popgen") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0bz0fhrq3dri6a0hvfc3zlvrns8mrzzlnicw5pyfa812gc1qwfvh")))) + (build-system cmake-build-system) + (arguments + (list #:tests? #f)) ; There are no tests. + (inputs + (list bpp-core bpp-seq)) + (home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-popgen/html/") + (synopsis "Bio++ population genetics library") + (description + "Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. This library provides population genetics-related modules.") - (license license:cecill-c)))) + (license license:cecill-c))) (define-public bpp-seq (package base-commit: 2d06dfc050114dba44e791d8decc8eaa705fee01 prerequisite-patch-id: 5853dbe5778b2160c2bf5dca3f01be75fcbb678c prerequisite-patch-id: 4af2ed7c595ec571d717d161aff1ef51a8dfc365 prerequisite-patch-id: e460dac992e961a5f13af1ed99bfad48d2f0ceb5 prerequisite-patch-id: 4241e6e34dc593a321a69e135db83293eaf011f7 prerequisite-patch-id: 78c7d0a29aee256ae2df1759863ef7e6dc34102f prerequisite-patch-id: 4dc46155f0d7730f6996403f20442c2892e08a7c -- 2.39.2