unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <62428@debbugs.gnu.org.>
Subject: [bug#62428] [PATCH 05/14] gnu: Add r-org-sc-sgd-db.
Date: Sat, 25 Mar 2023 00:18:51 +0100	[thread overview]
Message-ID: <20230324231900.28367-5-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): New variable.
---
 gnu/packages/bioconductor.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3ae0dba919..21aa3476c0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -116,6 +116,27 @@ (define-public r-org-bt-eg-db
 based on mapping using Entrez Gene identifiers.")
     (license license:artistic2.0)))
 
+(define-public r-org-sc-sgd-db
+  (package
+    (name "r-org-sc-sgd-db")
+    (version "3.16.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "org.Sc.sgd.db" version
+                              'annotation))
+       (sha256
+       (base32 "03b8m4p865kzhjj8zyhmc0ic0n4jyjdl4h8a8xny10b7xs6l0v9f"))))
+    (properties `((upstream-name . "org.Sc.sgd.db")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-annotationdbi))
+    (home-page "https://bioconductor.org/packages/org.Sc.sgd.db")
+    (synopsis "Genome wide annotation for Yeast")
+    (description
+     "Genome wide annotation for Yeast, primarily based on mapping using ORF
+identifiers from @acronym{SGD, Saccharomyces Genome Database}.")
+    (license license:artistic2.0)))
+
 (define-public r-pd-mapping50k-xba240
   (package
     (name "r-pd-mapping50k-xba240")
-- 
2.39.2





  parent reply	other threads:[~2023-03-24 23:21 UTC|newest]

Thread overview: 16+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-03-24 22:25 [bug#62428] gnu: Add r-anota2seq, r-hybridmtest, r-apalyzer, r-org-sc-sgd-db, r-apcomplex, r-mdqc, , r-parody, r-arraymvout, r-arrayquality, r-beaddatapackr, r-beadarray, r-arrayqualitymetrics, r-repmis, r-setrng Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 01/14] gnu: Add r-anota2seq Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 02/14] gnu: Add r-repmis Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 03/14] gnu: Add r-hybridmtest Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] Mădălin Ionel Patrașcu
2023-03-24 23:18   ` Mădălin Ionel Patrașcu [this message]
2023-03-24 23:18   ` [bug#62428] [PATCH 06/14] gnu: Add r-apcomplex Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 07/14] gnu: Add r-mdqc Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 08/14] gnu: Add r-parody Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 09/14] gnu: Add r-arraymvout Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 10/14] gnu: Add r-arrayquality Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 11/14] gnu: Add r-setrng Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 12/14] gnu: Add r-beaddatapackr Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 13/14] gnu: Add r-beadarray Mădălin Ionel Patrașcu
2023-03-24 23:19   ` [bug#62428] [PATCH 14/14] gnu: Add r-arrayqualitymetrics Mădălin Ionel Patrașcu
2023-10-04  9:06 ` bug#62428: gnu: Add r-anota2seq … Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20230324231900.28367-5-madalinionel.patrascu@mdc-berlin.de \
    --to=madalinionel.patrascu@mdc-berlin.de \
    --cc=62428@debbugs.gnu.org. \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).