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References: <4619c49d-2e96-49a5-7bf1-81877eb94696@mdc-berlin.de> In-Reply-To: <4619c49d-2e96-49a5-7bf1-81877eb94696@mdc-berlin.de> Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 24 Mar 2023 23:20:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62428 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <62428@debbugs.gnu.org.> Received: via spool by 62428-submit@debbugs.gnu.org id=B62428.167969996322089 (code B ref 62428); Fri, 24 Mar 2023 23:20:02 +0000 Received: (at 62428) by debbugs.gnu.org; 24 Mar 2023 23:19:23 +0000 Received: from localhost ([127.0.0.1]:41649 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqgs-0005kB-Oe for submit@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:23 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:50233) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqgq-0005jN-JQ for 62428@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:21 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1679699953; x=1681514354; bh=MeVX0Bk2E57msnI jWHtuPIhXbDV9yLTMYv2EeRFgdXM=; b=dGDh2OSPcLACrSpUwKQ8ExkSxLKTtid AhMPjIcE5wC2DrETo98GXigRRtFet6cbFD5aOR4QdeFeugcrCn60hwO4ryAySyUi R0VUoJO1SXFmx2FGRsog7bfxfgb6+QkSCdywtNkWKUFefdcs8XeZfuESg3CPDcJ4 6p6SZwbFoJd8= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id B1C9D30016F for <62428@debbugs.gnu.org>; Sat, 25 Mar 2023 00:19:13 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 00:19:11 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Sat, 25 Mar 2023 00:18:47 +0100 Message-ID: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-AS-Result: No-10--3.933000-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6ioK033WJkCkXjfR3d0weRm1/OiWPM9c7S+M w9GmoCTDtaS19CA2mWOa/i9HRzI0fYPVPAaE1AIJWeFNzK1vl0gK0ZgbTOeKUyiLz1Vtc/pWYDT IhMw3OOX0tCKdnhB589yM15V5aWpj6C0ePs7A07ba607moR85RGD4IDogaaVheJvX5hLxeooPQc Y4aTupiEFp+wBUhesaUw5xlhHUTSWyIjC0aI4hlUUzqxHl9/abO2k5GG6pBKvZpzWIFGCbEdAnz xkc/wOO+Yl/q6i1mnv1mO1iYLJDqT4cbBIKMuHq+68HqACCvKA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.933000-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-SNTS-SMTP: 33682B79A758EC4CEB62BF7610614F1883192248AB2F951E94D1D54EE7EE1BE92002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: X-Migadu-Queue-Id: 7A66C31856 X-Spam-Score: -0.04 X-Migadu-Spam-Score: -0.04 X-Migadu-Scanner: scn0.migadu.com List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-TUID: goUiXm9f9XNv * gnu/packages/bioconductor.scm (r-anota2seq): New variable. --- gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fe446df67a..37b649a7d6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12069,6 +12069,42 @@ (define-public r-anota the data set is suitable for such analysis.") (license license:gpl3))) +(define-public r-anota2seq + (package + (name "r-anota2seq") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "anota2seq" version)) + (sha256 + (base32 "14ggggfa6mdqcb2hfvann9mb66s7a9nxlnh31zblb3mrrjizg1x3")))) + (properties `((upstream-name . "anota2seq"))) + (build-system r-build-system) + (propagated-inputs + (list r-deseq2 + r-edger + r-limma + r-multtest + r-qvalue + r-rcolorbrewer + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/anota2seq") + (synopsis "Transcriptome-wide analysis of translational efficiency") + (description + "The anota2seq package provides analysis of translational efficiency and +differential expression analysis for polysome-profiling and ribosome-profiling +studies (two or more sample classes) quantified by RNA sequencing or +DNA-microarray. Polysome-profiling and ribosome-profiling typically generate +data for two RNA sources, translated mRNA and total mRNA. Analysis of +differential expression is used to estimate changes within each RNA source. +Analysis of translational efficiency aims to identify changes in translation +efficiency leading to altered protein levels that are independent of total mRNA +levels or buffering, a mechanism regulating translational efficiency so that +protein levels remain constant despite fluctuating total mRNA levels.") + (license license:gpl3))) + (define-public r-sigpathway (package (name "r-sigpathway") base-commit: ef71e3290916583973724316e815cee840c1b6d8 -- 2.39.2