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References: In-Reply-To: Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 20 Mar 2023 16:01:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62297 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62297@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62297-submit@debbugs.gnu.org id=B62297.16793280284446 (code B ref 62297); Mon, 20 Mar 2023 16:01:03 +0000 Received: (at 62297) by debbugs.gnu.org; 20 Mar 2023 16:00:28 +0000 Received: from localhost ([127.0.0.1]:55546 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvw-00019Z-HE for submit@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:28 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:50525) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvu-00018v-90 for 62297@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:26 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1679328020; x=1681142421; bh=r5bgxyB7XQZ7IFr BeU1FCkp1KbamVKPH+pSiwlIXjV4=; b=MgUheFBOXUHSJ9lVs1x+5s5TP3hFRfI HNr240amA12ogvqmnf9V8ZnlFP3nC656vpQa9EEwvPMxR7nfmukhr2P1E9gcX8dr nS8xyBOCee3zLgB/EVuSH9z0i0M9UHBR21Y/iQf2A58OhNiva/y5xgpJLSTxGfwS P7uxJgx5y1mg= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 42C3EA0150 for <62297@debbugs.gnu.org>; Mon, 20 Mar 2023 17:00:20 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 20 Mar 2023 17:00:17 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Mon, 20 Mar 2023 17:00:01 +0100 Message-ID: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-AS-Result: No-10--3.991400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCzGrCYQ4FUp6uuLH9BII+4qrKs axUiN/ynjtXFLFuP+NRJTjjs9yT6Yo8WMkQWv6iV3LAytsQR4e42j49Ftap9Eymsk/wUE4hrwMU UgHNDhDZRZAxu6UZJfx24cBmlgjfWGFTeUK36dNoU78lfzbRjdrv7CKoXvmm24fOs3ThkCUmKkn t7Gh8IHUCLIDC8rg/m/Az22SnGT74F2k07Nujv5x6Xh3Vy4y2+O91s7FwLn8xC2a7GIAOqG8ody TXpQo3UZHwBcdw5+Mg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.991400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-SNTS-SMTP: 4C18A848A5FE8690C31ABFAC0AEB6C30AE518722B09DFD57BECB0F1661FEAECD2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: X-Migadu-Queue-Id: 8C00B13632 X-Spam-Score: -1.86 X-Migadu-Spam-Score: -1.86 X-Migadu-Scanner: scn0.migadu.com List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-TUID: E8Wvi5rpKSjD * gnu/packages/bioconductor.scm (r-affyilm): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e54c9ccf2b..48aa426574 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2098,6 +2098,32 @@ (define-public r-affixcan expression values are known.") (license license:gpl3))) +(define-public r-affyilm + (package + (name "r-affyilm") + (version "1.50.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affyILM" version)) + (sha256 + (base32 "0i2hjaqjz06ym5kbw5da1h3cahc630mjwljsji1l2ks0gjcipll0")))) + (properties `((upstream-name . "affyILM"))) + (build-system r-build-system) + (propagated-inputs + (list r-affxparser + r-affy + r-biobase + r-gcrma)) + (home-page "https://bioconductor.org/packages/affyILM") + (synopsis "Linear model of background subtraction and the Langmuir isotherm") + (description + "The affyILM package is a preprocessing tool which estimates gene expression +levels for Affymetrix Gene Chips. Input from physical chemistry is employed to +first background subtract intensities before calculating concentrations on behal +of the Langmuir model.") + (license license:gpl3))) + (define-public r-affyrnadegradation (package (name "r-affyrnadegradation") base-commit: 1f36534c7e8f2325bff4df5d37ecc811dc63fc38 -- 2.39.2