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From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <62297@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#62297] [PATCH 1/5] gnu: Add r-affyilm.
Date: Mon, 20 Mar 2023 17:00:01 +0100	[thread overview]
Message-ID: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <be51027a78d6463a8fa3e56ebe066fb8@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-affyilm): New variable.
---
 gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e54c9ccf2b..48aa426574 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2098,6 +2098,32 @@ (define-public r-affixcan
 expression values are known.")
     (license license:gpl3)))
 
+(define-public r-affyilm
+  (package
+    (name "r-affyilm")
+    (version "1.50.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "affyILM" version))
+       (sha256
+        (base32 "0i2hjaqjz06ym5kbw5da1h3cahc630mjwljsji1l2ks0gjcipll0"))))
+    (properties `((upstream-name . "affyILM")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affxparser
+           r-affy
+           r-biobase
+           r-gcrma))
+    (home-page "https://bioconductor.org/packages/affyILM")
+    (synopsis "Linear model of background subtraction and the Langmuir isotherm")
+    (description
+     "The affyILM package is a preprocessing tool which estimates gene expression
+levels for Affymetrix Gene Chips.  Input from physical chemistry is employed to
+first background subtract intensities before calculating concentrations on behal
+of the Langmuir model.")
+    (license license:gpl3)))
+
 (define-public r-affyrnadegradation
   (package
     (name "r-affyrnadegradation")

base-commit: 1f36534c7e8f2325bff4df5d37ecc811dc63fc38
-- 
2.39.2





  reply	other threads:[~2023-03-20 16:47 UTC|newest]

Thread overview: 7+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-03-20 15:57 [bug#62297] [PATCH] gnu: Add r-affyilm, r-affyplm, r-affylmgui, r-annotationhubdata and r-tkrplot MadalinIonel.Patrascu
2023-03-20 16:00 ` Mădălin Ionel Patrașcu [this message]
2023-03-20 16:00   ` [bug#62297] [PATCH 2/5] gnu: Add r-affyplm Mădălin Ionel Patrașcu
2023-03-20 16:00   ` [bug#62297] [PATCH 3/5] gnu: Add r-tkrplot Mădălin Ionel Patrașcu
2023-03-20 16:00   ` [bug#62297] [PATCH 4/5] gnu: Add r-affylmgui Mădălin Ionel Patrașcu
2023-03-20 16:00   ` [bug#62297] [PATCH 5/5] gnu: Add r-annotationhubdata Mădălin Ionel Patrașcu
2023-03-20 18:33   ` bug#62297: [PATCH 1/5] gnu: Add r-affyilm Ricardo Wurmus

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