From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <61891@debbugs.gnu.org>
Subject: [bug#61891]
Date: Wed, 1 Mar 2023 08:23:43 +0100 [thread overview]
Message-ID: <20230301072343.708693-7-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230301072343.708693-1-madalinionel.patrascu@mdc-berlin.de>
Date: Wed, 1 Mar 2023 08:16:27 +0100
Subject: [PATCH 7/7] gnu: Add r-mmuphin.
* gnu/packages/bioconductor.scm (r-mmuphin): New variable.
---
gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c7f623343e..afe969e5de 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6811,6 +6811,46 @@ (define-public r-methylkit
TAB-Seq.")
(license license:artistic2.0)))
+(define-public r-mmuphin
+ (package
+ (name "r-mmuphin")
+ (version "1.12.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MMUPHin" version))
+ (sha256
+ (base32 "0vpap3avmrjy187s3dva6f008al6d935kpdf816xzl5gxl7zvf62"))))
+ (properties `((upstream-name . "MMUPHin")))
+ (build-system r-build-system)
+ (arguments
+ (list #:tests? #f)) ;; non deterministic, also it requieres http access
+ (inputs (list glpk))
+ (propagated-inputs
+ (list r-cowplot
+ r-biocstyle
+ r-dplyr
+ r-fpc
+ r-ggplot2
+ r-igraph
+ r-maaslin2
+ r-metafor
+ r-stringr
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/MMUPHin")
+ (synopsis "Meta-analysis with uniform pipeline for heterogeneity in microbiome")
+ (description
+ "MMUPHin is an R package for meta-analysis tasks of microbiome cohorts. It
+has function interfaces for:
+@itemize
+@item covariate-controlled batch- and cohort effect adjustment;
+@item meta-analysis differential abundance testing;
+@item meta-analysis unsupervised discrete structure (clustering) discovery;
+@item meta-analysis unsupervised continuous structure discovery.
+@end itemize")
+ (license license:expat)))
+
(define-public r-motifrg
(package
(name "r-motifrg")
--
2.39.1
next prev parent reply other threads:[~2023-03-01 7:25 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-03-01 7:20 [bug#61891] [PATCH] gnu: Add r-biglm, r-cplm, r-som, r-chemometrics, r-metagenomeseq, r-maaslin2, r-mmuphin Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] [PATCH 1/7] gnu: Add r-biglm Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] [PATCH 2/7] gnu: Add r-cplm Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-01 7:23 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-01 7:23 ` Mădălin Ionel Patrașcu [this message]
2023-03-01 10:53 ` [bug#61891] Mădălin Ionel Patrașcu
2023-03-02 21:09 ` bug#61891: Ricardo Wurmus
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