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dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=U6PSnHFs; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none) X-Migadu-Scanner: scn1.migadu.com X-TUID: dSfBX36JEHtB * gnu/packages/bioconductor.scm (r-dorothea): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 521d6c00be..0786160b5e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -466,6 +466,31 @@ (define-public r-bsgenome-mmusculus-ucsc-mm10 in Biostrings objects.") (license license:artistic2.0))) +(define-public r-dorothea + (package + (name "r-dorothea") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "dorothea" version + 'experiment)) + (sha256 + (base32 + "05vkb5mash2m8p6njk842sy5pz7vblrm8n9bphqbslm86kld5n92")))) + (properties `((upstream-name . "dorothea"))) + (build-system r-build-system) + (propagated-inputs (list r-bcellviper r-dplyr r-magrittr r-viper)) + (native-inputs (list r-knitr)) + (home-page "https://saezlab.github.io/dorothea/") + (synopsis "Collection of human and mouse TF regulons") + (description + "DoRothEA is a gene regulatory network containing signed transcription factor. +DoRothEA regulons, the collection of a TF andits transcriptional targets, +were curated and collected from different types ofevidence for both human +and mouse. A confidence level was assigned to each TF-target interaction +based on the number of supporting evidence.") + (license license:gpl3))) + (define-public r-genomeinfodbdata (package (name "r-genomeinfodbdata") -- 2.34.1