From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp10.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms5.migadu.com with LMTPS id SGBlARn83GOpEAEAbAwnHQ (envelope-from ) for ; Fri, 03 Feb 2023 13:20:41 +0100 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp10.migadu.com with LMTPS id +EeNABn83GPmRwAAG6o9tA (envelope-from ) for ; Fri, 03 Feb 2023 13:20:41 +0100 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id B043D2B1EA for ; Fri, 3 Feb 2023 13:20:40 +0100 (CET) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pNv32-0005m7-G4; Fri, 03 Feb 2023 07:20:08 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pNv2w-0005jf-RS for guix-patches@gnu.org; Fri, 03 Feb 2023 07:20:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pNv2w-0005yL-G4 for guix-patches@gnu.org; Fri, 03 Feb 2023 07:20:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pNv2w-0001Je-9V for guix-patches@gnu.org; Fri, 03 Feb 2023 07:20:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61251] [PATCH 2/3] gnu: Add r-bcellviper. Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 03 Feb 2023 12:20:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 61251 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61251@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.16754267694970 (code B ref -1); Fri, 03 Feb 2023 12:20:02 +0000 Received: (at submit) by debbugs.gnu.org; 3 Feb 2023 12:19:29 +0000 Received: from localhost ([127.0.0.1]:36660 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNv2O-0001I5-VG for submit@debbugs.gnu.org; Fri, 03 Feb 2023 07:19:29 -0500 Received: from lists.gnu.org ([209.51.188.17]:39730) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNv2O-0001Hm-8i for submit@debbugs.gnu.org; Fri, 03 Feb 2023 07:19:28 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pNv2K-0005Xj-JB for guix-patches@gnu.org; Fri, 03 Feb 2023 07:19:24 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pNv2I-0005p8-9P for guix-patches@gnu.org; Fri, 03 Feb 2023 07:19:24 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1675426750; x=1677241151; bh=IzOPx4wThypuvHqyxfAHTEoBHsxmomtjeKTe91Xxwm4=; b=C1MhILLpRDpW 3j9YRnCbehIicnQ8tQmzKtWemkOuK6jTFoZT90DcNwcuBHtn2FTYOYhdzcBwQLkP 6+FWAsClInhMq0N/LWnFyb6ow6kAqwO06URCsh107JPstHiGJ1EDPDed7WpT1R1o YosxskkHqspJuU0BB+aaLwmLeGWvDQg= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 6F00B300471 for ; Fri, 3 Feb 2023 13:19:10 +0100 (CET) Received: from localhost.localdomain (10.84.128.45) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Fri, 3 Feb 2023 13:19:05 +0100 From: Navid Afkhami Date: Fri, 3 Feb 2023 13:18:53 +0100 Message-ID: <20230203121854.95308-2-navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 In-Reply-To: <20230203121854.95308-1-navid.afkhami@mdc-berlin.de> References: <20230203121854.95308-1-navid.afkhami@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [10.84.128.45] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27424.007 X-TM-AS-Result: No-10--4.310400-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkENBi hTOKX++2RRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRlFexdJHJX6CepM qtPiQJGkigvsxCV7yoXPF44cFsZvM0N7DjAdxZNTi8zVgXoAltuJ5hXsnxp7jC24oEZ6SpSk6XE E7Yhw4FqEyPuTWsskax2siDKQnB+391IkCwx8EmS2Z6HhmRFk1+CQPx05nlQjrfam4l6XNJzZoi x8YAtS5yCTT9C8fWkqnjH/1auG6Ot8iatREjfpDE8nb9DwdQ4C2jbSab1pg0UjxFpwn53SOfhj5 CZkmSyI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.310400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27424.007 X-TM-SNTS-SMTP: 542675C4D8BF71FA0DB670CCD57B2CAA75ACF4973867B06E80D415563DE5FEA32002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1675426840; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=CGohTU5eZMTIarVFK5pQ266APxA4ZCF1lTKNqvU7qU4=; b=DTcBnvAcYPXokZDijVv3ZAysn3rlpTHSwTzvWfHUg1q/WHbQVjYWBtFD/+JcvXVsIckxRz qIeV4catgz0wx4yNc4IlnFpxr8bQpMSm7igP01zzmT0uLFG5nmk1bZEo/2uX/bkRw9Whyc 7fMoXqMESLPhaBnCj9gGixFH/sMeDI5QkVwIRno1TAgQ1TcDlPR834RChciVj7G9nmSlOs iwaJjvtrsOMfFTpyCZYhgOG95EYAFaZbnDIAUgtQF1phGSgWGXDdTzB94a32zYtdepUuP8 TlzEy+86vpPiofg7TPRfG1PWCerMYd5sKEx52Rni6nU94SEfIXrE7XCgpGSX4Q== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=C1MhILLp; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none) ARC-Seal: i=1; s=key1; d=yhetil.org; t=1675426840; a=rsa-sha256; cv=none; b=I/PHafJbmbKkUkCkGWEuGLKLvfotc+Pt9Li9MWra6Q+6yAJC/Hd9lx1giQuSRFa0kdJjGW 4RVrE/u9r43j4aUoBkqQSAJoO7SxTB3EFKRQ2iyryOi6fB7c8t0QC+M6vp3/s6MQF/bmus yXkYHhLhL1voPtibCyetO4CmeIkR4HXozAAegkDg7+RFenzy28m1eGTVkg4JiGC11fvtTT gHPZWxvuwpCeD4oj99SUu1f8iyCatEDkUQuqOQSC4fom5Y5Gmv90LGiQNDABJ/1aRkzcFT RPmUZtAKLqP7du4dCGISP9VhmbtEjBTU0VEEY+D2WrjMohn+JycsHWeVAu+/cA== X-Migadu-Spam-Score: -1.07 X-Spam-Score: -1.07 X-Migadu-Queue-Id: B043D2B1EA Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=C1MhILLp; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none) X-Migadu-Scanner: scn1.migadu.com X-TUID: 7IfslFey07Kz * gnu/packages/bioconductor.scm (r-bcellviper): New variable. --- gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index aeef6f4106..521d6c00be 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1248,6 +1248,29 @@ (define-public r-arrmdata from Illumina 450k methylation arrays.") (license license:artistic2.0))) +(define-public r-bcellviper + (package + (name "r-bcellviper") + (version "1.34.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "bcellViper" version + 'experiment)) + (sha256 + (base32 + "1fpgh70x2r68v0ximgcdphnyzq2hgiwbamyhbac3yka8flhrd1fm")))) + (properties `((upstream-name . "bcellViper"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase)) + (home-page "https://bioconductor.org/packages/bcellViper") + (synopsis + "Transcriptional interactome and normal human B-cell expression data") + (description + "This is a tool for human B-cell context-specific transcriptional regulatory network. +In addition, this package provides a human normal B-cells dataset for +the examples in package viper.") + (license license:gpl2+))) + (define-public r-bladderbatch (package (name "r-bladderbatch") -- 2.34.1