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(license license:gpl3+))) +(define-public r-adacgh2 + (package + (name "r-adacgh2") + (version "2.38.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ADaCGH2" version)) + (sha256 + (base32 "0g9x3lnr56035wq9ijdcri4sz5pwj8184yxm415gmsxrii9xvpfd")))) + (properties `((upstream-name . "ADaCGH2"))) + (build-system r-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'configure 'set-PYTHONPATH + (lambda _ + (setenv "PYTHONPATH" + (string-append (getcwd) ":" + (getenv "GUIX_PYTHONPATH")))))))) + ;; This is needed by toMap.py script which is not compatible with python3 + (inputs (list python2-minimal)) + (propagated-inputs + (list r-acgh + r-bit + r-cluster + r-dnacopy + r-ff + r-glad + r-snapcgh + r-tilingarray + r-waveslim)) + (home-page "https://github.com/rdiaz02/adacgh2") + (synopsis "Big data analysis from aCGH experiments") + (description + "This package analysis and creates plotts of array @acronym{CGH, comparative +genomic hybridization} data. Also, it allows usage of @acronym{CBS, Circular +Binary Segementation}, wavelet-based smoothing, HMM, BioHMM, GLAD, CGHseg. Most +computations are parallelized (either via forking or with clusters, including MPI +and sockets clusters) and use ff for storing data.") + (license license:gpl3+))) + (define-public r-adam (package (name "r-adam") -- 2.39.1