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dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=IZ0Xvm0L; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Scanner: scn0.migadu.com X-Migadu-Spam-Score: -1.47 X-Spam-Score: -1.47 X-Migadu-Queue-Id: 0F4CD45D3E X-TUID: tnVFI42x1h58 * gnu/packages/cran.scm (r-castor): New variable. --- gnu/packages/cran.scm | 28 +++++++++++++++++++++++++++- 1 file changed, 27 insertions(+), 1 deletion(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index dce349890a..51c9230156 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -35,7 +35,7 @@ ;;; Copyright © 2020 Aniket Patil ;;; Copyright © 2021 Marcel Schilling ;;; Copyright © 2021 Guillaume Le Vaillant -;;; Copyright © 2022 Navid Afkhami +;;; Copyright © 2022,2023 Navid Afkhami ;;; Copyright © 2022 Greg Hogan ;;; ;;; This file is part of GNU Guix. @@ -256,6 +256,32 @@ (define-public r-cachem automatically pruning objects to maintain the constraints.") (license license:expat))) +(define-public r-castor + (package + (name "r-castor") + (version "1.7.6") + (source (origin + (method url-fetch) + (uri (cran-uri "castor" version)) + (sha256 + (base32 + "1qbndwmzzpkzgiah0hgid9z5f9iv2j53d515bjcci1591gx1fk36")))) + (properties `((upstream-name . "castor"))) + (build-system r-build-system) + (propagated-inputs (list r-matrix r-naturalsort r-rcpp r-rspectra)) + (home-page "https://cran.r-project.org/package=castor") + (synopsis "Efficient phylogenetics on large trees") + (description + "This tool analyses on massive phylogenies comprising up to millions of tips. +Functions include pruning, rerooting, calculation of most-recent +common ancestors, calculating distances from the tree root and calculating +pairwise distances. In addition, This tool takes care of Calculation of +phylogenetic signal and mean trait depth (trait conservatism), ancestral state +reconstruction and hidden character prediction of discrete characters, simulating +and fitting models of trait evolution, fitting and simulating diversification +models, dating trees, comparing trees, and reading/writing trees in Newick format.") + (license license:gpl2+))) + (define-public r-collections (package (name "r-collections") -- 2.34.1