From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp10.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms5.migadu.com with LMTPS id +DHjFZGIzGOG0AAAbAwnHQ (envelope-from ) for ; Sun, 22 Jan 2023 01:51:29 +0100 Received: from aspmx1.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp10.migadu.com with LMTPS id iBIUFZGIzGP7dgEAG6o9tA (envelope-from ) for ; Sun, 22 Jan 2023 01:51:29 +0100 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 2557D20EFC for ; Sun, 22 Jan 2023 01:51:29 +0100 (CET) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pJOZf-0001be-1F; Sat, 21 Jan 2023 19:51:07 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pJOZa-0001aR-T1 for guix-patches@gnu.org; Sat, 21 Jan 2023 19:51:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pJOZa-0004vc-Kw for guix-patches@gnu.org; Sat, 21 Jan 2023 19:51:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pJOZa-0000it-6m; Sat, 21 Jan 2023 19:51:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#60997] [PATCH 2/4] gnu: Add python-hclust2. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sun, 22 Jan 2023 00:51:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 60997 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <60997@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 60997-submit@debbugs.gnu.org id=B60997.16743486172700 (code B ref 60997); Sun, 22 Jan 2023 00:51:02 +0000 Received: (at 60997) by debbugs.gnu.org; 22 Jan 2023 00:50:17 +0000 Received: from localhost ([127.0.0.1]:50096 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pJOYq-0000hT-LU for submit@debbugs.gnu.org; Sat, 21 Jan 2023 19:50:17 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:49549) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pJOYo-0000gz-Kg for 60997@debbugs.gnu.org; Sat, 21 Jan 2023 19:50:15 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1674348608; x=1676163009; bh=Nf6oksiBeSGVK65NQcG5M7yDIfZOUxOS/pEoJbcVVS8=; b=N0kFygMJ4l++ sla8nzcqgK8bUX/U5eYYGYLYAJk5MsbSE8jh5d9BefRhiEEgcVGqhQHL6y1JmcqO 1IyqOTbuNBk+kq5NGpkoerfYeXtPuWeyIYlxW/ZOF1e6UJDLr/SUzXzRY36qHRf8 ZmKcWS7ghoxT9jt3ugE6XyDGnjRX5Yc= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 6A428300627 for <60997@debbugs.gnu.org>; Sun, 22 Jan 2023 01:50:08 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Sun, 22 Jan 2023 01:50:02 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Sun, 22 Jan 2023 01:49:49 +0100 Message-ID: <20230122004951.119277-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230122004951.119277-1-madalinionel.patrascu@mdc-berlin.de> References: <20230122004951.119277-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27400.003 X-TM-AS-Result: No-10--5.081200-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJN6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VICu qghmtWfXb1veicsGbWruNT8xdcEnQwE+dA3RWUSvutvHF25zoU8xVUWGXs3C80JZ5MDd4/kUssb EkSX6c0kV5MniPWJBrU0Tjw561BCIxVDWOuzmzZI7lKkz03w0630tCKdnhB58I/9UW5M5dRMQpr Z/7WnuveTCMddcL/gjymsk/wUE4hpau/Gkfjk+cHaPMzQ1g8/CmQ7rVt1ovvbgrZu5D215bUzVm 4+JPhSp X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.081200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27400.003 X-TM-SNTS-SMTP: 188361D524DE3ED5CF3B060DA68204EA61453ED706E4BB700AC99525AA82BC6C2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1674348689; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=OePJirguyGL8WKKsU5i8cMGCNlikXJiPIzircdZZJIA=; b=H5o9A93P7xY3pEar8FECDqhk5ZRtEyxjWXWF5V/mSwedjkYMtJoozpxTvwwe0DfzlcA3jr W6yIyudXZWDAWwixSwOwPM6JdcX5yCkmdMdJIDkuEdf/RMDuvjgpbSOB8ecUXW7T4NDI4w aUKWtRBv/2/8bNfqsonvE+4bfw3apn/IB27ImkD48ONYSxLpGZdPXhkRnrB04xzmzN5Zf4 KTbGUZZOQboqq4+iogdRpfZYOZpIPrHJuv70M97/yKzJXPouh6H8YPfJzY6WdwNyEktlvR It6HeFtkEmawnhx+yhPLfKlTOYyx4JmPmXvBBNcwDodTCotVOmg5hxs1g8SbYg== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=N0kFygMJ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" ARC-Seal: i=1; s=key1; d=yhetil.org; t=1674348689; a=rsa-sha256; cv=none; b=qF0Qj7lVZEZqtSjiDGDNLmihN++4j57+5YuG+nQ2jqRAjh4C3cOkurEXE+ILdzzfftlkJ5 8dQX3dVZgax2aItCYNNVwRG4LZUllJhaqTgMtNROpBAaoB/VLsqp0xMLX7+sUw3oagalNZ qxs4d1rjeNKZ3U9SzOj8CsYNgFlzZyK313duMtceUpyq8cep11qUSa0P/7MxOc++09HFmC CIs/dX0UcBkr9wtZTrP35Usaauu19r7oHzRP3it2Li+UOhI4SM5pjh3KIWoCJKYxNgS+Tz 44b+9oClQuGV07Yk+wi/8Xqmw2uoU6rWHP/1DcuUQHc+s/NAs6MGqQkWpzUuMQ== X-Migadu-Spam: Yes X-Migadu-Scanner: scn1.migadu.com X-Migadu-Spam-Score: 8.50 X-Spam-Score: 8.50 X-Migadu-Queue-Id: 2557D20EFC X-Spam: Yes Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=N0kFygMJ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-TUID: gLvNsdCUu0Lo * gnu/packages/bioinformatics.scm (python-hclust2): New variable. --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4e7bc07a5f..bf01c9c7e4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1041,6 +1041,32 @@ (define-public python-cmseq and sequence consensus.") (license license:expat))) +(define-public python-hclust2 + (package + (name "python-hclust2") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "hclust2" version)) + (sha256 + (base32 + "0v89n2g42d7jhgfs8glf06apgxx6aswp3mfisgnhm518cv8z2rwn")))) + (build-system python-build-system) + (arguments + (list + #:tests? #f)) ;;pypi no tests + (propagated-inputs + (list python-matplotlib + python-numpy + python-pandas + python-scipy)) + (home-page "http://github.com/SegataLab/hclust2/") + (synopsis "Plotting heat-maps for publications") + (description + "Hclust2 is a handy tool for plotting heat-maps with several useful options +to produce high quality figures that can be used in publication") + (license license:expat))) + (define-public python-htsget (package (name "python-htsget") -- 2.39.1