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dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=pucPVhsX; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-TUID: 4P1aMpxobIuU * gnu/packages/bioconductor.scm (r-scds): New variable. --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 2 +- 2 files changed, 29 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 93c6165b62..bdbdeecc35 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12,6 +12,7 @@ ;;; Copyright © 2021 Hong Li ;;; Copyright © 2021 Tim Howes ;;; Copyright © 2021 Nicolas Vallet +;;; Copyright © 2023 Navid Afkhami ;;; ;;; This file is part of GNU Guix. ;;; @@ -7678,6 +7679,33 @@ (define-public r-trajectoryutils structures to hold pseudotime inference results.") (license license:gpl3))) +(define-public r-scds + (package + (name "r-scds") + (version "1.14.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "scds" version)) + (sha256 + (base32 + "0zdf9yf5s0l8ma7d8yhi7bjd964yj84f5h6aq2p0sypjlnc515hd")))) + (properties `((upstream-name . "scds"))) + (build-system r-build-system) + (propagated-inputs (list r-dplyr + r-matrix + r-proc + r-s4vectors + r-singlecellexperiment + r-summarizedexperiment + r-xgboost)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/scds") + (synopsis "In-silico doublet annotation for single cell RNA sequencing data") + (description + "This is an R package for doublet annotation of single cell RNA sequencing data. +@code{scds} provides methods to annotate doublets in scRNA-seq data computationally.") + (license license:expat))) + (define-public r-slingshot (package (name "r-slingshot") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 86d65d2031..70ac252a8c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -23,7 +23,7 @@ ;;; Copyright © 2021 Hong Li ;;; Copyright © 2021, 2022, 2023 Simon Tournier ;;; Copyright © 2021 Felix Gruber -;;; Copyright © 2022 Navid Afkhami +;;; Copyright © 2022,2023 Navid Afkhami ;;; Copyright © 2022 Antero Mejr ;;; ;;; This file is part of GNU Guix. -- 2.34.1