From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <60938@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#60938] [PATCH 2/2] gnu: Add r-breakpointr.
Date: Wed, 18 Jan 2023 18:35:59 +0100 [thread overview]
Message-ID: <20230118173559.73235-2-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230118173559.73235-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-breakpointr): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 27f8111982..5a69aecf18 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3500,6 +3500,40 @@ (define-public r-biocgenerics
packages.")
(license license:artistic2.0)))
+(define-public r-breakpointr
+ (package
+ (name "r-breakpointr")
+ (version "1.16.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "breakpointR" version))
+ (sha256
+ (base32
+ "0j1f43lhgkapjyxlil9fflqh9nf3andhmvirdcv45y60wvljn4gx"))))
+ (properties `((upstream-name . "breakpointR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocgenerics
+ r-breakpointrdata
+ r-cowplot
+ r-doparallel
+ r-foreach
+ r-genomeinfodb
+ r-genomicalignments
+ r-genomicranges
+ r-ggplot2
+ r-gtools
+ r-iranges
+ r-rsamtools
+ r-s4vectors))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/daewoooo/BreakPointR")
+ (synopsis "Find breakpoints in Strand-seq data")
+ (description
+ "This package implements functions for finding breakpoints, plotting and
+export of Strand-seq data.")
+ (license license:expat)))
+
(define-public r-cardelino
(package
(name "r-cardelino")
--
2.39.1
next prev parent reply other threads:[~2023-01-18 17:37 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-01-18 17:33 [bug#60938] [patch] gnu: Add r-breakpointrdata and r-breakpointr MadalinIonel.Patrascu
2023-01-18 17:35 ` [bug#60938] [PATCH 1/2] gnu: Add r-breakpointrdata Mădălin Ionel Patrașcu
2023-01-18 17:35 ` Mădălin Ionel Patrașcu [this message]
2023-01-18 21:46 ` bug#60938: [PATCH 2/2] gnu: Add r-breakpointr Ricardo Wurmus
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