From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <60878@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#60878] [PATCH 2/2] gnu: Add r-anvil.
Date: Tue, 17 Jan 2023 14:18:23 +0100 [thread overview]
Message-ID: <20230117131823.55318-2-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230117131823.55318-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-anvil): New variable.
---
gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ca236bcf75..35aed4b62c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2443,6 +2443,47 @@ (define-public r-animalcules
to understand their data better and discover new insights.")
(license license:artistic2.0)))
+(define-public r-anvil
+ (package
+ (name "r-anvil")
+ (version "1.10.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnVIL" version))
+ (sha256
+ (base32
+ "0iqsffkrxv28g9cddx2w05f2dbscwxhh6bpizwa8xaxhvn5bcpsv"))))
+ (properties `((upstream-name . "AnVIL")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocmanager
+ r-dplyr
+ r-dt
+ r-futile-logger
+ r-htmltools
+ r-httr
+ r-jsonlite
+ r-miniui
+ r-rapiclient
+ r-rlang
+ r-shiny
+ r-tibble
+ r-tidyr
+ r-tidyselect))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AnVIL")
+ (synopsis "Provides access to AnVIL, Terra, Leonardo and other projects")
+ (description
+ "The AnVIL is a cloud computing resource developed in part by the National
+Human Genome Research Institute. The AnVIL package provides end-user and developer
+functionality. For the end-user, AnVIL provides fast binary package installation,
+utitlities for working with Terra/AnVIL table and data resources, and convenient
+functions for file movement to and from Google cloud storage. For developers,
+AnVIL provides programatic access to the Terra, Leonardo, Rawls, Dockstore, and
+Gen3 RESTful programming interface, including helper functions to transform JSON
+responses to formats more amenable to manipulation in R.")
+ (license license:artistic2.0)))
+
(define-public r-aldex2
(package
(name "r-aldex2")
--
2.38.1
next prev parent reply other threads:[~2023-01-17 13:19 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-01-17 13:04 [bug#60878] [PATCH] gnu: Add r-rapiclient and r-anvil MadalinIonel.Patrascu
2023-01-17 13:18 ` [bug#60878] [PATCH 1/2] gnu: Add r-rapiclient Mădălin Ionel Patrașcu
2023-01-17 13:18 ` Mădălin Ionel Patrașcu [this message]
2023-01-22 8:16 ` bug#60878: " Ricardo Wurmus
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