From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <60877@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#60877] [PATCH 3/4] gnu: Add r-speaq.
Date: Tue, 17 Jan 2023 13:25:37 +0100 [thread overview]
Message-ID: <20230117122538.41537-3-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230117122538.41537-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-speaq): New variable.
---
gnu/packages/bioconductor.scm | 42 ++++++++++++++++++++++++++++++++++-
1 file changed, 41 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c2fa26cb59..7498c3a767 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7,7 +7,7 @@
;;; Copyright © 2017, 2018, 2019, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019, 2020, 2021, 2022 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
-;;; Copyright © 2020, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
+;;; Copyright © 2020-2023 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
@@ -7624,6 +7624,46 @@ (define-public r-slingshot
graph construction.")
(license license:artistic2.0)))
+;; This is a CRAN package but it depends on a bionconductor package.
+(define-public r-speaq
+ (package
+ (name "r-speaq")
+ (version "2.7.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "speaq" version))
+ (sha256
+ (base32
+ "0z9a3nbfazphp090c6hg892vjq7jp4g4cij3s5wbs1q567inbmlk"))))
+ (properties `((upstream-name . "speaq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-cluster
+ r-data-table
+ r-dosnow
+ r-foreach
+ r-ggplot2
+ r-gridextra
+ r-impute
+ r-massspecwavelet
+ r-missforest
+ r-reshape2
+ r-rfast
+ r-rvest
+ r-xml2))
+ (native-inputs (list r-knitr))
+ (home-page "https://cran.r-project.org/package=speaq")
+ (synopsis "Tools for nuclear magnetic resonance spectra alignment")
+ (description
+ "This package helps with @acronym{NMR, Nuclear Magnetic Resonance} spectroscopy
+data analysis as easy as possible. It only requires a small set of functions to
+perform an entire analysis. Speaq offers the possibility of raw spectra alignment
+and quantitation but also an analysis based on features whereby the spectra are
+converted to peaks which are then grouped and turned into features. These features
+can be processed with any number of statistical tools either included in speaq
+or available elsewhere on CRAN.")
+ (license license:asl2.0)))
+
(define-public r-stager
(package
(name "r-stager")
--
2.38.1
next prev parent reply other threads:[~2023-01-17 13:11 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-01-17 12:22 [bug#60877] [PATCH] gnu: Add r-baseline, r-missforest, r-speaq and r-alpsnmr MadalinIonel.Patrascu
2023-01-17 12:25 ` [bug#60877] [PATCH 1/4] gnu: Add r-baseline Mădălin Ionel Patrașcu
2023-01-17 12:25 ` [bug#60877] [PATCH 2/4] gnu: Add r-missforest Mădălin Ionel Patrașcu
2023-01-17 12:25 ` Mădălin Ionel Patrașcu [this message]
2023-01-17 12:25 ` [bug#60877] [PATCH 4/4] gnu: Add r-alpsnmr Mădălin Ionel Patrașcu
2023-01-22 8:09 ` bug#60877: [PATCH 1/4] gnu: Add r-baseline Ricardo Wurmus
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