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From: Ricardo Wurmus <rekado@elephly.net>
To: 60009@debbugs.gnu.org
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#60009] [PATCH 02/18] gnu: python-hyperopt: Update to 0.2.7.
Date: Mon, 12 Dec 2022 15:27:00 +0100	[thread overview]
Message-ID: <20221212142716.9460-2-rekado@elephly.net> (raw)
In-Reply-To: <20221212142716.9460-1-rekado@elephly.net>

* gnu/packages/machine-learning.scm (python-hyperopt): Update to 0.2.7.
[arguments]: Adjust check phase; disable test_distribution_rvs test.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-py4j.
[native-inputs]: Remove python-ipython and python-ipyparallel.
---
 gnu/packages/machine-learning.scm | 36 ++++++++++++++++---------------
 1 file changed, 19 insertions(+), 17 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index fc8de01066..3dbe54a24a 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1552,35 +1552,39 @@ (define-public vowpal-wabbit
 (define-public python-hyperopt
   (package
     (name "python-hyperopt")
-    (version "0.2.5")
+    (version "0.2.7")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "hyperopt" version))
        (sha256
-        (base32 "1k4ma8ci0bxghw7g4ms944zak1pi83yv2d6bxd7fcslm1zalfq5w"))))
-    (build-system python-build-system)
+        (base32 "0jd1ghmm423kbhjvd6pxq92y5vkz25390687fcnd7fshh3jrmy0v"))))
+    (build-system pyproject-build-system)
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
+     (list
+      #:phases
+      '(modify-phases %standard-phases
          (replace 'check
-           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+           (lambda* (#:key tests? #:allow-other-keys)
              (when tests?
-               (add-installed-pythonpath inputs outputs)
-               (invoke "python" "-m" "pytest" "--ignore"
+               (invoke "python" "-m" "pytest"
                        ;; Needs python-pyspark.
-                       "hyperopt/tests/test_spark.py"
+                       "--ignore" "hyperopt/tests/integration/test_spark.py"
                        ;; Needs both python-scikit-learn and python-lightgbm.
-                       "--ignore" "hyperopt/tests/test_atpe_basic.py"
+                       "--ignore" "hyperopt/tests/unit/test_atpe_basic.py"
                        ;; The tests below need python-lightgbm.
-                       "-k" (string-append "not test_branin"
-                                           " and not test_distractor"
-                                           " and not test_q1lognormal"
-                                           " and not test_quadratic1"
-                                           " and not test_twoarms"))))))))
+                       "-k"
+                       (string-append "not test_branin"
+                                      " and not test_distractor"
+                                      " and not test_q1lognormal"
+                                      " and not test_quadratic1"
+                                      " and not test_twoarms"
+                                      ;; XXX Type error with this version of scipy
+                                      " and not test_distribution_rvs"))))))))
     (propagated-inputs
      (list python-cloudpickle
            python-future
+           python-py4j
            python-networkx
            python-numpy
            python-scipy
@@ -1588,8 +1592,6 @@ (define-public python-hyperopt
            python-tqdm))
     (native-inputs
      (list python-black
-           python-ipython
-           python-ipyparallel
            python-nose
            python-pymongo
            python-pytest))
-- 
2.36.1





  reply	other threads:[~2022-12-12 14:29 UTC|newest]

Thread overview: 29+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-12-12 14:22 [bug#60009] Update python-graphviz and other Python updates Ricardo Wurmus
2022-12-12 14:26 ` [bug#60009] [PATCH 01/18] gnu: python-graphviz: Update to 0.20.1 Ricardo Wurmus
2022-12-12 14:27   ` Ricardo Wurmus [this message]
2022-12-12 14:27   ` [bug#60009] [PATCH 03/18] gnu: python-biopython: Update to 1.80 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 04/18] gnu: python-hicmatrix: Update to 16 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 05/18] gnu: python-pygenometracks: Update to 3.5 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 06/18] gnu: python-hicexplorer: Update to 3.7.2 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 07/18] gnu: python-dna-features-viewer: Update to 3.1.1 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 08/18] gnu: python-bokeh: Skip failing PIL test Ricardo Wurmus
2022-12-12 19:10     ` zimoun
2022-12-12 20:09       ` Ricardo Wurmus
2022-12-12 20:37         ` Simon Tournier
2022-12-12 23:06           ` Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 09/18] gnu: sqlite-next: Update to 3.40.0 Ricardo Wurmus
2022-12-12 19:08     ` zimoun
2022-12-12 20:11       ` Ricardo Wurmus
2022-12-12 20:56         ` Simon Tournier
2022-12-12 23:02           ` Ricardo Wurmus
2022-12-12 23:21             ` Simon Tournier
2022-12-12 23:26               ` bug#60009: " Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 10/18] gnu: python-apsw: Update to 3.40.0.0 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 11/18] gnu: python-cgatcore: Update to 0.6.14 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 12/18] gnu: python-flask-restful: Update to 0.3.9 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 13/18] gnu: python-marshmallow: Update to 3.19.0 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 14/18] gnu: python-apispec: Update to 6.0.2 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 15/18] gnu: python-pyjwt: Update to 2.6.0 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 16/18] gnu: python-flasgger: Update to 0.9.5 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 17/18] gnu: seqmagick: Update to 0.8.4 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 18/18] gnu: cnvkit: Update to 0.9.9 Ricardo Wurmus

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