From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <59911@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#59911] [PATCH 7/7] gnu: Add r-wpm.
Date: Thu, 8 Dec 2022 22:13:22 +0100 [thread overview]
Message-ID: <20221208211322.28459-7-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20221208211322.28459-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-wpm): New variable.
---
gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c62c5970b8..21b69cab01 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12244,6 +12244,48 @@ (define-public r-wppi
scores and a path search algorithm.")
(license license:expat)))
+(define-public r-wpm
+ (package
+ (name "r-wpm")
+ (version "1.8.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "wpm" version))
+ (sha256
+ (base32
+ "05zpj0i4741xn1g0yhkq3mg9zjppfryrfc47pxnys9bjfij0az52"))))
+ (properties `((upstream-name . "wpm")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-cli
+ r-config
+ r-dplyr
+ r-dt
+ r-ggplot2
+ r-golem
+ r-logging
+ r-rcolorbrewer
+ r-rlang
+ r-shiny
+ r-shinycustomloader
+ r-shinydashboard
+ r-shinywidgets
+ r-stringr
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/HelBor/wpm")
+ (synopsis "Generating well plate maker")
+ (description
+ "The @acronym{WPM, Well-Plate Maker} is a Shiny application deployed as an
+R package. Functions for a command-line/script use are available. The WPM allows
+users to generate well plate maps to carry out their experiments while improving
+the handling of batch effects. In particular, it helps controlling the \"plate
+effect\" thanks to its ability to randomize samples over multiple well plates.
+The algorithm for placing the samples is inspired by the backtracking algorithm:
+the samples are placed at random while respecting specific spatial constraints.")
+ (license license:artistic2.0)))
+
(define-public r-wrench
(package
(name "r-wrench")
--
2.38.1
next prev parent reply other threads:[~2022-12-08 21:15 UTC|newest]
Thread overview: 11+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-12-08 21:10 [bug#59911] [PATCH] gnu: Add r-logging, r-shinycustomloader, r-anytime, r-shinywidgets, r-attempt, r-golem and r-wpm MadalinIonel.Patrascu
2022-12-08 21:13 ` [bug#59911] [PATCH 1/7] gnu: Add r-logging Mădălin Ionel Patrașcu
2022-12-08 21:13 ` [bug#59911] [PATCH 2/7] gnu: Add r-shinycustomloader Mădălin Ionel Patrașcu
2022-12-08 21:13 ` [bug#59911] [PATCH 3/7] gnu: Add r-anytime Mădălin Ionel Patrașcu
2022-12-08 21:13 ` [bug#59911] [PATCH 4/7] gnu: Add r-shinywidgets Mădălin Ionel Patrașcu
2022-12-12 17:49 ` Ricardo Wurmus
2022-12-08 21:13 ` [bug#59911] [PATCH 5/7] gnu: Add r-attempt Mădălin Ionel Patrașcu
2022-12-08 21:13 ` [bug#59911] [PATCH 6/7] gnu: Add r-golem Mădălin Ionel Patrașcu
2022-12-08 21:13 ` Mădălin Ionel Patrașcu [this message]
2022-12-12 18:03 ` [bug#59911] [PATCH 1/7] gnu: Add r-logging Ricardo Wurmus
2023-09-02 4:41 ` [bug#59911] Add r-shinywidgets, r-wpm Vagrant Cascadian
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