From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <59835@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#59835] [PATCH 2/3] gnu: Add r-altcdfenvs.
Date: Mon, 5 Dec 2022 16:21:52 +0100 [thread overview]
Message-ID: <20221205152153.18545-2-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20221205152153.18545-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-altcdfenvs): New variable.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7cace3317c..37b84983c4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2492,6 +2492,37 @@ (define-public r-alpine
data.")
(license license:gpl2+)))
+(define-public r-altcdfenvs
+ (package
+ (name "r-altcdfenvs")
+ (version "2.60.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "altcdfenvs" version))
+ (sha256
+ (base32
+ "0fm4l93j6nm1w1w57zzryc1hkzapp8l16pkwjzdzllvwvsnsg8r0"))))
+ (properties `((upstream-name . "altcdfenvs")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-affy
+ r-biobase
+ r-biocgenerics
+ r-biostrings
+ r-hypergraph
+ r-makecdfenv
+ r-s4vectors))
+ (home-page "https://bioconductor.org/packages/altcdfenvs")
+ (synopsis
+ "Convenience data structures and functions to handle CDF environments")
+ (description
+ "The package is usable with @code{Affymetrix GeneChip} short oligonucleotide
+arrays, and it can be adapted or extended to other platforms. It is able to
+modify or replace the grouping of probes in the probe sets. Also, the package
+contains simple functions to read @code{R} connections in the @code{FASTA} format
+and it can create an alternative mapping from sequences.")
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
--
2.38.1
next prev parent reply other threads:[~2022-12-05 15:23 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-12-05 15:18 [bug#59835] [PATCH] gnu: Add r-makecdfenv, r-altcdfenvs and r-harshlight MadalinIonel.Patrascu
2022-12-05 15:21 ` [bug#59835] [PATCH 1/3] gnu: Add r-makecdfenv Mădălin Ionel Patrașcu
2022-12-05 15:21 ` Mădălin Ionel Patrașcu [this message]
2022-12-05 15:21 ` [bug#59835] [PATCH 3/3] gnu: Add r-harshlight Mădălin Ionel Patrașcu
2022-12-12 14:36 ` bug#59835: [PATCH 1/3] gnu: Add r-makecdfenv Ricardo Wurmus
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