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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=k+CdMPm+; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 5.76 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=k+CdMPm+; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 19EE32CC2E X-Spam-Score: 5.76 X-Migadu-Scanner: scn0.migadu.com X-TUID: KNXK83JKljwk * gnu/packages/bioconductor.scm (r-decontam): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ce95a9e5af..e1175e46f1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3220,6 +3220,33 @@ (define-public r-deconrnaseq profiles.") (license license:gpl2))) +(define-public r-decontam + (package + (name "r-decontam") + (version "1.16.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "decontam" version)) + (sha256 + (base32 + "1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9")))) + (properties `((upstream-name . "decontam"))) + (build-system r-build-system) + (propagated-inputs + (list r-ggplot2 + r-reshape2)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/benjjneb/decontam") + (synopsis + "Identification of the contaminants in marker-gene and metagenomics data") + (description + "This package offers simple statistical identification of contaminating +sequence features in marker-gene or metagenomics data. Works on any kind of +feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic +groups, MAGs,...). Requires DNA quantitation data or sequenced negative control +samples.") + (license license:artistic2.0))) + (define-public r-deconvr (package (name "r-deconvr") -- 2.38.0