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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=o1jmqv0h; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 7.16 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=o1jmqv0h; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: CCEB23DB42 X-Spam-Score: 7.16 X-Migadu-Scanner: scn1.migadu.com X-TUID: FDoc1ytab9d8 * gnu/packages/bioconductor.scm (r-deco): New variable. --- gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b8535250f9..2f2268e5e6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3075,6 +3075,48 @@ (define-public r-decipher biological sequences.") (license license:gpl3))) +(define-public r-deco + (package + (name "r-deco") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "deco" version)) + (sha256 + (base32 + "18n5zgln33c79jbjzjlivs8ihyg8zci6minfqlvagxgzcpa67k0m")))) + (properties `((upstream-name . "deco"))) + (build-system r-build-system) + (propagated-inputs + (list r-ade4 + r-annotationdbi + r-biobase + r-biocparallel + r-biocstyle + r-cluster + r-foreign + r-gdata + r-ggplot2 + r-gplots + r-gridextra + r-limma + r-locfit + r-made4 + r-rcolorbrewer + r-reshape2 + r-scatterplot3d + r-sfsmisc + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/fjcamlab/deco") + (synopsis "Decomposing heterogeneous cohorts using omic data profiling") + (description + "The package discovers differential features in hetero- and homogeneous omic +data by a two-step method including subsampling @code{LIMMA} and @code{NSCA}. +@code{DECO} reveals feature associations to hidden subclasses not exclusively +related to higher deregulation levels.") + (license (license:fsdg-compatible "GPL (>=3)")))) + (define-public r-deconvr (package (name "r-deconvr") base-commit: ac51b9c86d58cfdb13ee643a2fdc8e979939a260 -- 2.38.0