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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=EBeOtQzd; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 8.69 X-Spam: Yes Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=EBeOtQzd; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 238682A48A X-Spam-Score: 8.69 X-Migadu-Spam: Yes X-Migadu-Scanner: scn1.migadu.com X-TUID: w7a8ntzfmZSS * gnu/packages/bioconductor.scm (r-damefinder): New variable. --- gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9f79954d8d..81918e4fe6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3036,6 +3036,47 @@ (define-public r-dama microarray data.") (license license:gpl2+))) +(define-public r-damefinder + (package + (name "r-damefinder") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "DAMEfinder" version)) + (sha256 + (base32 + "123ra94bij0m45j2fzqr7fjipj4ld9kgk0kir1zfdbbd5h8h4mdf")))) + (properties `((upstream-name . "DAMEfinder"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-biostrings + r-bumphunter + r-cowplot + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-ggplot2 + r-iranges + r-limma + r-plyr + r-readr + r-reshape2 + r-rsamtools + r-s4vectors + r-stringr + r-summarizedexperiment + r-variantannotation)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/DAMEfinder") + (synopsis "Differential allelicly methylated regions") + (description + "This package offers functionality for taking methtuple or @code{bismark} +outputs to calculate @acronym{ASM, Allele-Specific Methylation} scores and compute +@acronym{DAMEs, Differential Allelicly MEthylated regions}. It also offers nice +visualization of methyl-circle plots.") + (license license:expat))) + (define-public r-dearseq (package (name "r-dearseq") -- 2.38.0