From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <57341@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#57341] [PATCH 1/2] gnu: Add r-rvenn.
Date: Mon, 22 Aug 2022 14:14:40 +0200 [thread overview]
Message-ID: <20220822121441.2235-1-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <2a2d3263e6e74fc3a699a46a25dc5959@mdc-berlin.de>
* gnu/packages/cran.scm (r-rvenn): New variable.
---
gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e03b707162..2091c258ec 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -749,6 +749,42 @@ (define-public r-v8
WebAssembly engine.")
(license license:expat)))
+(define-public r-rvenn
+ (package
+ (name "r-rvenn")
+ (version "1.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "RVenn" version))
+ (sha256
+ (base32
+ "016m00xv59lkwm2is32v5nr4lw5a1ymdnz34r3ffflcv9bfrc6n4"))))
+ (properties `((upstream-name . "RVenn")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ggforce
+ r-ggplot2
+ r-magrittr
+ r-pheatmap
+ r-purrr
+ r-rlang
+ r-vegan))
+ (native-inputs (list r-knitr))
+ (home-page "https://cran.r-project.org/package=RVenn")
+ (synopsis "Set operations for many sets")
+ (description
+ "The base functions for set operations in @code{R} can be used for only two
+sets. This package @code{RVenn} provides functions for dealing with multiple sets.
+It uses @code{purr} to find the union, intersection and difference of three or
+more sets. This package also provides functions for pairwise set operations among
+several sets. Further, based on @code{ggplot2} and @code{ggforce}, a Venn diagram
+can be drawn for two or three sets. For bigger data sets, a clustered heatmap
+showing the presence or absence of the elements of the sets can be drawn based on
+the @code{pheatmap} package. Finally, enrichment test can be applied to two sets
+whether an overlap is statistically significant or not.")
+ (license license:gpl3)))
+
(define-public r-dot
(package
(name "r-dot")
base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90
--
2.37.2
next prev parent reply other threads:[~2022-08-22 12:16 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-08-22 12:11 [bug#57341] gnu: Add r-ggvenndiagram and r-rvenn MadalinIonel.Patrascu
2022-08-22 12:14 ` Mădălin Ionel Patrașcu [this message]
2022-08-22 12:14 ` [bug#57341] [PATCH 2/2] gnu: Add r-ggvenndiagram Mădălin Ionel Patrașcu
2022-08-23 10:05 ` bug#57341: [PATCH 1/2] gnu: Add r-rvenn Ricardo Wurmus
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