unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <57341@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#57341] [PATCH 1/2] gnu: Add r-rvenn.
Date: Mon, 22 Aug 2022 14:14:40 +0200	[thread overview]
Message-ID: <20220822121441.2235-1-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <2a2d3263e6e74fc3a699a46a25dc5959@mdc-berlin.de>

* gnu/packages/cran.scm (r-rvenn): New variable.
---
 gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e03b707162..2091c258ec 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -749,6 +749,42 @@ (define-public r-v8
 WebAssembly engine.")
     (license license:expat)))
 
+(define-public r-rvenn
+  (package
+    (name "r-rvenn")
+    (version "1.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "RVenn" version))
+       (sha256
+        (base32
+         "016m00xv59lkwm2is32v5nr4lw5a1ymdnz34r3ffflcv9bfrc6n4"))))
+    (properties `((upstream-name . "RVenn")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-ggforce
+           r-ggplot2
+           r-magrittr
+           r-pheatmap
+           r-purrr
+           r-rlang
+           r-vegan))
+    (native-inputs (list r-knitr))
+    (home-page "https://cran.r-project.org/package=RVenn")
+    (synopsis "Set operations for many sets")
+    (description
+     "The base functions for set operations in @code{R} can be used for only two
+sets.  This package @code{RVenn} provides functions for dealing with multiple sets.
+It uses @code{purr} to find the union, intersection and difference of three or
+more sets.  This package also provides functions for pairwise set operations among
+several sets.  Further, based on @code{ggplot2} and @code{ggforce}, a Venn diagram
+can be drawn for two or three sets.  For bigger data sets, a clustered heatmap
+showing the presence or absence of the elements of the sets can be drawn based on
+the @code{pheatmap} package.  Finally, enrichment test can be applied to two sets
+whether an overlap is statistically significant or not.")
+    (license license:gpl3)))
+
 (define-public r-dot
   (package
     (name "r-dot")

base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90
-- 
2.37.2





  reply	other threads:[~2022-08-22 12:16 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-08-22 12:11 [bug#57341] gnu: Add r-ggvenndiagram and r-rvenn MadalinIonel.Patrascu
2022-08-22 12:14 ` Mădălin Ionel Patrașcu [this message]
2022-08-22 12:14   ` [bug#57341] [PATCH 2/2] gnu: Add r-ggvenndiagram Mădălin Ionel Patrașcu
2022-08-23 10:05   ` bug#57341: [PATCH 1/2] gnu: Add r-rvenn Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20220822121441.2235-1-madalinionel.patrascu@mdc-berlin.de \
    --to=madalinionel.patrascu@mdc-berlin.de \
    --cc=57341@debbugs.gnu.org \
    --cc=rekado@elephly.net \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).