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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 8.59 X-Spam: Yes Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=lSAhe08w; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 6F862C165 X-Spam-Score: 8.59 X-Migadu-Spam: Yes X-Migadu-Scanner: scn0.migadu.com X-TUID: 8+jgmTfnJQJO * gnu/packages/bioconductor.scm (r-organism-dplyr): New variable. --- gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7d2ca413e9..ed9e4df73d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5017,6 +5017,45 @@ (define-public r-mzr previously been used in XCMS.") (license license:artistic2.0))) +(define-public r-organism-dplyr + (package + (name "r-organism-dplyr") + (version "1.24.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Organism.dplyr" version)) + (sha256 + (base32 + "0j29f85d66c45ww3417xx376vpz0mmvga5n7h2cl1sd4h70b55as")))) + (properties `((upstream-name . "Organism.dplyr"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-annotationfilter + r-biocfilecache + r-dbi + r-dbplyr + r-dplyr + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-iranges + r-rlang + r-rsqlite + r-s4vectors + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/Organism.dplyr") + (synopsis "Dplyr-based access to Bioconductor annotation resources") + (description + "This package provides an alternative interface to Bioconductor @code{ +annotation} resources, in particular the gene identifier mapping functionality +of the @code{org} packages (e.g., @code{org.Hs.eg.db}) and the genome coordinate +functionality of the @code{TxDb} packages (e.g., +@code{TxDb.Hsapiens.UCSC.hg38.knownGene}).") + (license license:artistic2.0))) + (define-public r-organismdbi (package (name "r-organismdbi") base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90 -- 2.37.2