From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <56819@debbugs.gnu.org>
Subject: [bug#56819] [PATCH 1/2] gnu: Add r-phyclust.
Date: Thu, 28 Jul 2022 23:38:58 +0200 [thread overview]
Message-ID: <20220728213859.21641-1-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <3f5cff2631864372b7a0b1233e11ce86@mdc-berlin.de>
* gnu/packages/cran.scm (r-phyclust): New variable.
---
gnu/packages/cran.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 731facb4e5..e63cb28e19 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11699,6 +11699,31 @@ (define-public r-nleqslv
singular or ill-conditioned Jacobian.")
(license license:gpl2+)))
+(define-public r-phyclust
+ (package
+ (name "r-phyclust")
+ (version "0.1-30")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "phyclust" version))
+ (sha256
+ (base32
+ "0fy9q95vmlm9idpax7alhpfwn30gflnc9md72g91jypyxkx5nr7p"))))
+ (properties `((upstream-name . "phyclust")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-ape))
+ (home-page "https://snoweye.github.io/phyclust/")
+ (synopsis "Studying phyloclustering and exploring DNA sequence data")
+ (description
+ "@dfn{Phylogenetic clustering} (phyloclustering) is an evolutionary continuous
+time Markov Chain model-based approach to identify population structure from
+molecular data without assuming linkage equilibrium. The package @code{phyclust}
+provides a convenient implementation of phyloclustering for DNA and SNP data,
+capable of clustering individuals into subpopulations and identifying molecular
+sequences representative of those subpopulations. It is designed in @code{C} for
+performance and interfaced with @code{R} for visualization.")
+ (license license:gpl2+)))
+
(define-public r-physicalactivity
(package
(name "r-physicalactivity")
base-commit: bdb2e262fcbea76de807cd829c2d2270661546a5
--
2.37.1
next prev parent reply other threads:[~2022-07-28 21:42 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-07-28 21:35 [bug#56819] gnu: Add r-phyclust and r-infercnv. (New variables) MadalinIonel.Patrascu
2022-07-28 21:38 ` Mădălin Ionel Patrașcu [this message]
2022-07-28 21:38 ` [bug#56819] [PATCH 2/2] gnu: Add r-infercnv Mădălin Ionel Patrașcu
2022-08-01 14:20 ` Ricardo Wurmus
2022-08-02 8:23 ` bug#56819: " Ricardo Wurmus
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