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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.17 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b="mK/9Klpf"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 9577E10403 X-Spam-Score: 6.17 X-Migadu-Scanner: scn0.migadu.com X-TUID: hMZMqYSW16/N * gnu/packages/bioconductor.scm (r-muscat): New variable. --- gnu/packages/bioconductor.scm | 50 +++++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 31484799b2..c79787cea2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4629,6 +4629,56 @@ (define-public r-motifrg throughput genetic sequencing data sets using regression methods.") (license license:artistic2.0))) +(define-public r-muscat + (package + (name "r-muscat") + (version "1.10.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "muscat" version)) + (sha256 + (base32 + "1j3zkhqgza92vdykb1yia1jjwsdqra6q9c0jk6p5p2x0778xqgfd")))) + (properties `((upstream-name . "muscat"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocparallel + r-blme + r-complexheatmap + r-data-table + r-deseq2 + r-dplyr + r-edger + r-ggplot2 + r-glmmtmb + r-limma + r-lme4 + r-lmertest + r-matrix + r-matrixstats + r-progress + r-purrr + r-s4vectors + r-scales + r-scater + r-sctransform + r-scuttle + r-singlecellexperiment + r-summarizedexperiment + r-variancepartition + r-viridis)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/HelenaLC/muscat") + (synopsis "Multi-sample multi-group scRNA-seq data analysis tools") + (description + "This package @code{muscat} provides various methods and visualization tools +for @dfn{DS}(differential splicing) analysis in multi-sample, multi-group, +multi-(cell-)subpopulation scRNA-seq data, including cell-level mixed models and +methods based on aggregated \"pseudobulk\" data, as well as a flexible simulation +platform that mimics both single and multi-sample scRNA-seq data.") + (license license:gpl3))) + (define-public r-mutationalpatterns (package (name "r-mutationalpatterns") base-commit: dbcd7876566840f31b763e28bb74394f0914b397 -- 2.37.1