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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.47 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=n4ESgTqX; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 6617BC41C X-Spam-Score: 6.47 X-Migadu-Scanner: scn1.migadu.com X-TUID: /5aoix84mNvV * gnu/packages/bioinformatics.scm (r-millefy): New variable. --- gnu/packages/bioinformatics.scm | 37 ++++++++++++++++++++++++++++++++- 1 file changed, 36 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 325c159df1..cf736dfbaa 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11,7 +11,7 @@ ;;; Copyright © 2017, 2021, 2022 Arun Isaac ;;; Copyright © 2018 Joshua Sierles, Nextjournal ;;; Copyright © 2018 Gábor Boskovits -;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu +;;; Copyright © 2018, 2019, 2020, 2021, 2022 Mădălin Ionel Patrașcu ;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer ;;; Copyright © 2019 Brian Leung ;;; Copyright © 2019 Brett Gilio @@ -7523,6 +7523,41 @@ (define-public r-scde ;; See https://github.com/hms-dbmi/scde/issues/38 (license license:gpl2))) +(define-public r-millefy + (package + (name "r-millefy") + (version "0.1.9-beta") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/yuifu/millefy") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0z2y0x99f761pxvg6n37cmnyrnj699jhjk43pvk05sa86iykgizl")))) + (properties `((upstream-name . "millefy"))) + (build-system r-build-system) + (propagated-inputs + (list r-data-table + r-destiny + r-dplyr + r-genomicranges + r-iranges + r-magrittr + r-rsamtools + r-rtracklayer + r-tidyr)) + (home-page "https://github.com/yuifu/millefy") + (synopsis "Make millefy plot with single-cell RNA-seq data") + (description "@code{Millefy} is a tool for visualizing read coverage of +@dfn{scRNA-seq}(single-cell RNA sequencing) datasets in genomic contexts. By +dynamically and automatically reorder single cells based on locus-specific +pseudo time, @code{Millefy} highlights cell-to-cell heterogeneity in read coverage +of scRNA-seq data.") + (license license:expat))) + (define-public r-misha (package (name "r-misha") base-commit: dbcd7876566840f31b763e28bb74394f0914b397 -- 2.37.1