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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.94 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=SFocsJSy; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: BB84116C92 X-Spam-Score: 6.94 X-Migadu-Scanner: scn1.migadu.com X-TUID: 26asjWf2pUrq * gnu/packages/bioconductor.scm (r-awst): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..fa9c728a44 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,32 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-awst + (package + (name "r-awst") + (version "1.4.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "awst" version)) + (sha256 + (base32 + "0iw3zycmj95rmdx7f2w0j4yxkzd90y87lrzgdn9cyvvzi5avflav")))) + (properties `((upstream-name . "awst"))) + (build-system r-build-system) + (propagated-inputs (list r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/drisso/awst") + (synopsis "Asymmetric within-sample transformation") + (description + "This package @dfn{awst} (Asymmetric Within-Sample Transformation) that +regularizes RNA-seq read counts and reduces the effect of noise on the +classification of samples. @code{AWST} comprises two main steps: standardization +and smoothing. These steps transform gene expression data to reduce the noise +of the lowly expressed features, which suffer from background effects and low +signal-to-noise ratio, and the influence of the highly expressed features, which +may be the result of amplification bias and other experimental artifacts.") + (license license:expat))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 -- 2.36.1