unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: 56165@debbugs.gnu.org
Subject: [bug#56165] [PATCH] gnu: Add r-attract.
Date: Thu, 23 Jun 2022 13:54:42 +0200	[thread overview]
Message-ID: <20220623115442.26983-1-madalinionel.patrascu@mdc-berlin.de> (raw)

* gnu/packages/bioconductor.scm (r-attract): New variable.
---
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..dcc9503a1b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,37 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-attract
+  (package
+    (name "r-attract")
+    (version "1.48.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "attract" version))
+              (sha256
+               (base32
+                "0f1fsv278kpnxvqg9qa5rw2k3zr8zws0ab73ldl60h6pv9cy8x82"))))
+    (properties `((upstream-name . "attract")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-annotationdbi
+           r-biobase
+           r-cluster
+           r-gostats
+           r-keggrest
+           r-limma
+           r-org-hs-eg-db
+           r-reactome-db))
+    (home-page "https://bioconductor.org/packages/attract")
+    (synopsis "Finding drivers of Kauffman's attractor landscape")
+    (description
+     "This package contains the functions to find the gene expression modules
+that represent the drivers of Kauffman's attractor landscape.  The modules are
+the core attractor pathways that discriminate between different cell types of
+groups of interest.  Each pathway has a set of synexpression groups, which show
+transcriptionally-coordinated changes in gene expression.")
+    (license license:lgpl2.0+)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
-- 
2.36.1





             reply	other threads:[~2022-06-23 11:57 UTC|newest]

Thread overview: 2+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-06-23 11:54 Mădălin Ionel Patrașcu [this message]
2022-10-31 20:39 ` bug#56165: [PATCH] gnu: Add r-attract Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20220623115442.26983-1-madalinionel.patrascu@mdc-berlin.de \
    --to=madalinionel.patrascu@mdc-berlin.de \
    --cc=56165@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).