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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.34 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b="eWHA+lZ/"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 979D13AF90 X-Spam-Score: 6.34 X-Migadu-Scanner: scn0.migadu.com X-TUID: XRTGwbuNUV2g * gnu/packages/bioconductor.scm (r-aspli): New variable. --- gnu/packages/bioconductor.scm | 48 +++++++++++++++++++++++++++++++++++ 1 file changed, 48 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..0136d268b3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,54 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-aspli + (package + (name "r-aspli") + (version "2.6.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASpli" version)) + (sha256 + (base32 + "1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz")))) + (properties `((upstream-name . "ASpli"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-biocgenerics + r-biocstyle + r-data-table + r-dt + r-edger + r-genomicalignments + r-genomicfeatures + r-genomicranges + r-gviz + r-htmltools + r-igraph + r-iranges + r-limma + r-mass + r-pbmcapply + r-rsamtools + r-s4vectors + r-tidyr + r-upsetr)) + (home-page "https://bioconductor.org/packages/ASpli") + (synopsis "Analysis of alternative splicing using RNA-Seq") + (description + "@dfn{AS} (alternative splicing) is a common mechanism of post-transcriptional +gene regulation in eukaryotic organisms that expands the functional and regulatory +diversity of a single gene by generating multiple mRNA isoforms that encode +structurally and functionally distinct proteins. @code{ASpli} is an integrative +pipeline and user-friendly @code{R} package that facilitates the analysis of changes +in both annotated and novel AS events. @code{ASpli} integrates several independent +signals in order to deal with the complexity that might arise in splicing +patterns.") + ;; The authors didn't specify any GPL version in description or in the + ;; sources. + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 -- 2.36.1