unofficial mirror of 
 help / color / mirror / code / Atom feed
* [bug#56142] [PATCH] gnu: Add r-aseb.
@ 2022-06-22 13:57 Mădălin Ionel Patrașcu
  0 siblings, 0 replies; only message in thread
From: Mădălin Ionel Patrașcu @ 2022-06-22 13:57 UTC (permalink / raw)
  To: 56142

* gnu/packages/bioconductor.scm (r-aseb): New variable.
 gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..f961d201d2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
+(define-public r-aseb
+  (package
+    (name "r-aseb")
+    (version "1.40.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ASEB" version))
+              (sha256
+               (base32
+                "1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p"))))
+    (properties `((upstream-name . "ASEB")))
+    (build-system r-build-system)
+    (home-page "")
+    (synopsis "Predict acetylated lysine sites")
+    (description
+     "@code{ASEB} is an R package to predict lysine sites that can be acetylated
+by a specific @dfn{KAT}-family (K-acetyl-transferases).  Lysine acetylation is
+a well-studied posttranslational modification on kinds of proteins.  About four
+thousand lysine acetylation sites and over 20 lysine KATs have been identified.
+However, which KAT is responsible for a given protein or lysine site acetylation
+is mostly unknown.  In this package, we use a @dfn{GSEA}-like (Gene Set Enrichment
+Analysis) method to make predictions.  GSEA method was developed and successfully
+used to detect coordinated expression changes and find the putative functions
+of the long non-coding RNAs.")
+    (license license:gpl3+)))
 (define-public r-biocversion
     (name "r-biocversion")

base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9

^ permalink raw reply	[flat|nested] only message in thread

only message in thread, other threads:[~2022-06-22 13:59 UTC | newest]

Thread overview: (only message) (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2022-06-22 13:57 [bug#56142] [PATCH] gnu: Add r-aseb Mădălin Ionel Patrașcu

Code repositories for project(s) associated with this inbox:

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).