unofficial mirror of 
 help / color / mirror / code / Atom feed
From: "Mădălin Ionel Patrașcu" <>
Subject: [bug#56141] [PATCH] gnu: Add r-asafe.
Date: Wed, 22 Jun 2022 15:45:33 +0200	[thread overview]
Message-ID: <> (raw)

* gnu/packages/bioconductor.scm (r-asafe): New variable.
 gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..2d199a79f2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,28 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
+(define-public r-asafe
+  (package
+    (name "r-asafe")
+    (version "1.22.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ASAFE" version))
+              (sha256
+               (base32
+                "1l9iqw2imr6w2gwqrmg05jp6lj2xc7hbyhd144d4q8vw8z7ga4ns"))))
+    (properties `((upstream-name . "ASAFE")))
+    (build-system r-build-system)
+    (native-inputs (list r-knitr))
+    (home-page "")
+    (synopsis "Ancestry Specific Allele Frequency Estimation")
+    (description
+     "The @code{ASAFE} package contains a collection of functions that can be used
+to carry out an @dfn{EM} (Expectation–maximization) algorithm to estimate ancestry
+-specific allele frequencies for a bi-allelic genetic marker, e.g. an @dfn{SNP}
+(single nucleotide polymorphism) from genotypes and ancestry pairs.")
+    (license license:artistic2.0)))
 (define-public r-biocversion
     (name "r-biocversion")

base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9

             reply	other threads:[~2022-06-22 13:47 UTC|newest]

Thread overview: 2+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-06-22 13:45 Mădălin Ionel Patrașcu [this message]
2022-11-24 14:02 ` bug#56141: [PATCH] gnu: Add r-asafe Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:

  List information:

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \ \ \ \

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).