From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <56098@debbugs.gnu.org>
Subject: [bug#56098] [PATCH 1/2] gnu: Add r-microbiome.
Date: Sun, 19 Jun 2022 22:42:00 +0200 [thread overview]
Message-ID: <20220619204201.18713-1-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <f929ac3e2f3e45e0a6d512b14fac8452@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-microbiome): New variable.
---
gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..54280a26f6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8100,6 +8100,44 @@ (define-public r-bumphunter
studies.")
(license license:artistic2.0)))
+(define-public r-microbiome
+ (package
+ (name "r-microbiome")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "microbiome" version))
+ (sha256
+ (base32
+ "1z9arkjp5xszlg07mzb4p163i74jfbd9p4gbwv5syivnpl040k12"))))
+ (properties `((upstream-name . "microbiome")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-compositions
+ r-dplyr
+ r-ggplot2
+ r-phyloseq
+ r-reshape2
+ r-rtsne
+ r-scales
+ r-tibble
+ r-tidyr
+ r-vegan))
+ (native-inputs (list r-knitr))
+ (home-page "https://microbiome.github.io/microbiome/")
+ (synopsis "Tools for microbiome analysis")
+ (description
+ "The @code{microbiome} facilitates @code{phyloseq} exploration and analysis
+of taxonomic profiling data. This package provides tools for the manipulation,
+statistical analysis, and visualization of taxonomic profiling data. In addition
+to targeted case-control studies, the @code{microbiome} facilitates scalable
+exploration of population cohorts. This package supports the independent
+@code{phyloseq} data format and expands the available toolkit in order to
+facilitate the standardization of the analyses and the development of best
+practices.")
+ (license license:bsd-2)))
+
(define-public r-minfi
(package
(name "r-minfi")
base-commit: d6bd483cd53cedc8da39fcc6c419f7241080ed21
--
2.36.1
next prev parent reply other threads:[~2022-06-19 20:43 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-06-19 20:39 [bug#56098] gnu: Add r-microbiome, r-ancombc MadalinIonel.Patrascu
2022-06-19 20:42 ` Mădălin Ionel Patrașcu [this message]
2022-06-19 20:42 ` [bug#56098] [PATCH 2/2] gnu: Add r-ancombc Mădălin Ionel Patrașcu
2022-11-24 17:06 ` bug#56098: gnu: Add r-microbiome, r-ancombc Ricardo Wurmus
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